Polyodon spathula (Mississippi paddlefish): 121324099
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Entry
121324099 CDS
T07273
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04137
Mitophagy - animal
pspa04140
Autophagy - animal
pspa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121324099
04137 Mitophagy - animal
121324099
04148 Efferocytosis
121324099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121324099
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121324099
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
121324099
NCBI-ProteinID:
XP_041121499
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Position
12:complement(4132834..4147682)
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AA seq
784 aa
AA seq
DB search
MEVVEVTEKKRVSSDRRKEKSRDAARCRRGKESEVFYELAHELPLPHNVTSHLDKASIMR
LILSYLRMRNVLSAAGDTKEESELDSQFNNFYLKALDGFVMVLSADGDMVYLSENVSKCM
GLTQFELTGHSLFDFAHPCDHEELREVLTHRTGSTKKGKEQNTERSFFLRMKCTLTNRGR
TVNIKSATWKVLHCTGHIRVCDPPKGEQDNCGYKEPPMTSMVLICDPIPHPSNIEVPLDS
KTFLSRHSLDMKFSYCDERITELMGYQPEDLLGRSVYEYYHALDSDHLTKTHHDLFAKGQ
ATTGQYRMLAKKGGFVWVETQATVIYNTKNSQPQCIVCVNYVLSGVVGEDLVFSLGQTEN
ILKPVESPDADVTKLLMQVDPEESTNSLFEKLKEEPEALTLLAPAAGDTIISLDFSKSDD
SEIKKLEEVPLYNDVMLPSSSEKMLMSPLPPTEMVKPLLSTHDPVLNVEVVTKLESNPEP
LGISFTIPQTPDLSLPSTTQSSPEPSSPSNYCFKVQTDISGEFKMDLVEKLFAIDTEVRT
PFTTQVADDFDLEMLAPYIPMDDDFQLRTLDQLSPMEPVSASPPDIFHKAQTLVTFAPTA
AEYDVMPLMSIVSPLHMAEEVESAPNSPFCGKNSRTASPIRKSTQPLVKLEEQSNQSHPV
TPLISKRPSAFNEELSPKMLAQRKRKLESGLSLSKAVGIGTRLHKHEGTLKRSKASEDSG
KEVLTPKTILLLSTDLASRLLACSFENSGLPQLTRYDCEVNAPVQGKQTLLQGEDLIQAL
DQVN
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggtggaagttacagagaaaaaacgggtcagttctgatcgtagaaaggagaaa
tcaagagatgcagcaagatgtcgaagaggcaaagagtcggaggtcttctacgagctggcc
cacgagttgcctctgcctcacaatgtcacctcgcacctggataaggcatccataatgaga
ctgatcctcagctaccttcgtatgagaaatgtactcagtgctgcaggtgacacaaaggag
gagtctgaattggacagccaatttaacaacttctacctgaaagcactggatggatttgta
atggtcctgtcagcagatggagatatggtttatctttctgaaaatgtcagcaagtgcatg
ggccttactcagttcgagttaacaggccacagcttgtttgattttgcacacccctgtgac
catgaggagttgagagaagtgctcacacatagaacaggatccaccaagaagggtaaggag
caaaatacagaacgcagctttttcctcagaatgaagtgcactctgaccaacagaggccgt
actgttaatatcaagtctgcaacatggaaggttcttcactgcacaggccacatccgggtg
tgtgacccccccaaaggagaacaggataactgcgggtacaaggagcccccaatgacttcc
atggtgttgatctgcgatccaatcccacacccgtcaaatattgaagttccattggacagc
aagacatttctaagtcgccacagcctagacatgaaattctcatactgtgatgagagaatt
acagagctgatgggataccagcctgaagatctcctgggccgttcagtgtacgagtattac
catgccctggattccgaccatcttactaaaacgcaccatgacttgtttgcaaaaggacaa
gccaccacagggcaataccggatgctggccaagaaaggggggtttgtttgggttgaaact
caagctactgtcatctacaacaccaagaattctcagccacagtgcattgtctgtgtgaac
tatgtcctgagtggtgtagttggagaagatcttgtattttccctgggtcagactgagaac
atattaaaaccagtcgagtctccagatgcagacgttacaaagctcttaatgcaggtggat
ccagaggagagtacaaacagcctgtttgagaaactgaaagaagaaccagaagccttgaca
ctgcttgccccagctgcaggagacaccataatatctttggatttcagcaaatcagatgat
tcggagataaagaaacttgaggaggttccattgtacaatgatgtcatgctgccttcatcc
agtgagaagatgctgatgtcccctctcccacccacagaaatggtgaagccattgcttagc
actcatgacccagttttgaatgtggaggtagtcacaaagctggagtccaacccagagcca
ctgggaatttcatttaccattcctcaaacaccagacttatctttaccaagtacaacccag
agttcgccagagccaagcagtcccagtaattattgctttaaagttcaaactgatatttct
ggtgagtttaagatggatctggttgagaaactctttgccattgatactgaagttaggacc
ccctttactacacaggttgcagatgactttgatttggaaatgttggctccttatatccca
atggatgatgacttccagttacgcacactggaccaactgtctcctatggagcccgtctct
gcaagccctccagacatctttcataaagctcagacactggtcacgtttgcaccaacagca
gcagagtatgatgtcatgcctctgatgagtattgtctcacctctgcatatggcggaagaa
gtagagagtgctccaaattcgcctttctgtggaaaaaatagccgaacagcctctccgatc
agaaaaagcacacaacctctagtaaagttggaggaacaatctaaccagtcccatccagta
acacctttgataagtaaaaggcctagtgctttcaatgaagagttatccccaaagatgcta
gctcagcggaagagaaaactagaaagtgggctctcactttccaaggcagttggcattggt
actcggctacataaacatgaagggacattgaaaagatccaaggcatctgaggatagtggt
aaagaggtgctgacgcccaagaccattctcctactgtcaacagacttggcaagcagactg
ctagcctgttcatttgaaaacagcggattaccacagctcacccgttacgattgtgaagta
aatgctccggttcaaggcaaacagaccctgcttcagggtgaagatctaatccaggctctg
gatcaagtcaactga
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