Polyodon spathula (Mississippi paddlefish): 121324104
Help
Entry
121324104 CDS
T07273
Symbol
mnat1
Name
(RefSeq) CDK-activating kinase assembly factor MAT1
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
pspa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121324104 (mnat1)
09124 Replication and repair
03420 Nucleotide excision repair
121324104 (mnat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121324104 (mnat1)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121324104 (mnat1)
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121324104 (mnat1)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121324104 (mnat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-RING_UBOX
TRAF3_RING
zf-C3HC4
zf-UDP
zf-P11
zf-RING_2
Calici_MSP
Motif
Other DBs
NCBI-GeneID:
121324104
NCBI-ProteinID:
XP_041121508
LinkDB
All DBs
Position
12:complement(4244161..4289418)
Genome browser
AA seq
310 aa
AA seq
DB search
MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVEMLFVRGSGNCQECDTPLRKNNFRV
QLFEDPAVDKEVEIRKKVLKIYNKNDSNFPSLREYNDYLELIEEIVYNLTNNVDLENTKQ
MMEQYQRENKEIIQKNKIKLTREQEELEELLAMERQENEQRRLLQLKEEKRQVQAKKKNK
QALLDELESSQLPATLLLAQHKDRAAQLETELEKQRQIVKPTTFSTGIMMGQKISLQPVP
KIEEVLYAYKPIHVATYGPPVPDLENLGRFGYLNHVRAASPQDLAGGYTSNLACHRALQD
AFSGLFLQSV
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atggacgaccagggctgtccgcgatgcaaaactaccaaatacaggaacccgtctctgaaa
ctaatggttaatgtctgtggacatacactatgcgaaagctgtgtggaaatgctgtttgtc
cgtggctctggaaactgccaggagtgtgacaccccgctcaggaaaaacaacttccgggtt
caacttttcgaagaccctgcagtagacaaggaagtggaaatccgtaagaaagtcttaaag
atatacaacaagaatgattccaatttccccagtctcagagaatacaatgactatcttgaa
ttgattgaagaaattgtttacaaccttacaaataatgtggacctagagaacacaaagcag
atgatggagcagtaccagagagagaacaaagaaatcattcagaagaacaaaatcaaattg
actcgggagcaggaggagctggaggagctgctggctatggagaggcaggagaatgagcag
agaagactgctgcagctcaaggaggagaagcggcaggtccaggccaagaagaagaacaag
caggcgctgctggatgagctggaaagctcccagctgcctgccaccttgctgttggctcag
cacaaggatcgcgccgcccagctagagacagagctggaaaaacagcggcagatcgtcaag
cccaccaccttctctactggaatcatgatgggacagaagatctcattgcagcctgtgccc
aagattgaagaggtcctatatgcgtataagcctatacacgtggcgacatacggaccccca
gttccagacctggagaatcttggaagatttggatacctgaaccatgtgcgtgcagcttcc
ccacaagacctggcagggggctacacctccaatcttgcctgtcaccgcgccttgcaggat
gcgttcagtggactcttcttacagtctgtgtag
DBGET
integrated database retrieval system
