Polyodon spathula (Mississippi paddlefish): 121324110
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Entry
121324110 CDS
T07273
Symbol
ubtf
Name
(RefSeq) nucleolar transcription factor 1
KO
K09273
upstream-binding transcription factor
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121324110 (ubtf)
03021 Transcription machinery [BR:
pspa03021
]
121324110 (ubtf)
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
121324110 (ubtf)
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
121324110 (ubtf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_5
HMG_box_2
HMG_WDHD1
DUF4473
DUF3670
Motif
Other DBs
NCBI-GeneID:
121324110
NCBI-ProteinID:
XP_041121520
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All DBs
Position
12:39850319..39873532
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AA seq
741 aa
AA seq
DB search
MNGTMELSDEVIAVKEKASENWPKEDLLGLLESMRINLPQNDLTKFKTAESHLDWGKVAF
NQYTADMCKEKWLEISQEVRKFRTLSEVILDAQDHVKNPYKGKKLKKHPDFPKKPLTPYF
RFFMEKRAKYAKLHPEMSNLDLTKILSVKYKELPDKKKMKYMQDFQREKEEFERNMARFR
QEHPDLIENFKRSDVPEKPKTPQQLWYCHERKIHLKTHPDATTKDIKEGLGKQWSQLPDK
KRLKWITKSLEQQKQYGEMMRGYIQQHPELNMTQEGITKSTLTKAERQLKDKFDGRPTKP
PPNGYSLYCAELMSNMKDVPSTERMVMCSRQWKLLTQNEKDSFQKRCEQRKKAYEIEMNR
FLCSLSEEEQQRVLGEEKMQGFNRKGAGNAPSKKNSTFKVGSDKPKRPISAMFIFSEEKR
HKLQEEHPELAESQLTRLLARRWNDLSDKKKEKYKRLEAAVKADSEKKELEERGHLPESP
KTAEDIWQQSVIGDYLARYRNDRAKALQAMEATWKTMEKKEKIMWIKKAAEDQKRYEREL
SEMRAPATVTGTSKKMKFEGEPKKPPMNGYQKFSQELLSNGELNQLPLKERMVEIGGRWQ
KLTQAHKDRYKKMAEEKQKQYKVQLEHWLKSLSSQDRAIYKEYTSNKRKSTSKPRGTIAK
VKAVVARKSDTEEEEDEEDEEEEEKEKAESSEEDSSSDEESEGEENEEEEEGDEEADDKE
NESESSSSSSSSEETSDSDSD
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaacggaactatggagttgtctgatgaagtcattgctgtcaaggaaaaagcttcagaa
aactggcccaaagaggacttgctgggcttgctggagagcatgagaatcaaccttccccag
aatgacctgaccaaattcaaaactgcagagtcgcatctggactggggcaaggtggcgttc
aaccagtacacagcagacatgtgcaaagagaagtggctcgagatttctcaagaggtgcgg
aagttccgcacactgtccgaagtcatcttggacgctcaggatcatgtgaagaacccctac
aagggcaagaagctcaagaaacaccctgatttcccgaagaagcccctgactccctacttc
cgcttcttcatggagaaaagagccaagtatgccaaactgcacccagagatgagcaacctg
gacctcaccaagatcctgtccgtaaagtacaaggagctaccagacaagaaaaagatgaag
tacatgcaggactttcagagggagaaggaagagtttgaacgcaatatggcaagatttagg
caggagcaccctgacctgatcgagaactttaaacgctcggatgtcccggagaaacccaaa
acaccccagcagctctggtactgtcacgagaggaagatccacttaaaaacacaccctgat
gccacaaccaaggatatcaaagaaggcctgggcaagcagtggtcccagctgcctgacaag
aagaggctgaagtggatcacaaagtctctggagcaacagaagcagtatggggagatgatg
cgagggtacatccagcagcaccctgaactcaacatgacccaggaggggatcaccaagtcc
accctgactaaagctgagcggcagctgaaggacaagttcgatggcagacccaccaagccc
cctccgaacggctactccctgtactgtgccgagctcatgtccaacatgaaggacgtcccc
agcacagagcgcatggtgatgtgcagccgacagtggaagctgctgacccagaatgagaag
gacagctttcagaagcgctgcgagcagagaaagaaagcatatgaaattgagatgaaccgg
ttcttatgtagtctctccgaggaggagcagcagcgtgtgttgggagaggagaagatgcag
ggcttcaacaggaaaggagctggtaacgctccctccaagaaaaactccaccttcaaggtg
ggctcagacaaacccaagcgaccgatctccgccatgttcatcttctctgaggagaagcgt
cacaagctgcaggaggagcatcccgagctggcagaaagccagctgacacggctgctggcc
cgcaggtggaacgacctatctgacaagaagaaggagaagtacaagcgtttggaggctgcg
gtgaaagcggattcagagaagaaagagctggaggagcgtgggcacctgccggagtctccc
aaaacagcagaggacatctggcagcagagcgtcatcggggattacctggccaggtaccgg
aatgaccgtgccaaagcactgcaagccatggaggccacttggaagaccatggagaagaag
gagaagatcatgtggatcaagaaggcagctgaggatcaaaagagatacgagagggagctg
agtgagatgcgcgcccctgccacagtgacaggcactagcaagaagatgaagtttgaagga
gagcctaagaagccgcccatgaacgggtatcagaagttctctcaggagctgctgtcgaac
ggggagctgaaccagcttcccctgaaggagcgcatggtggagattggggggcgctggcag
aagctcacgcaggctcacaaggaccgctacaagaagatggcagaggagaagcagaaacag
tataaagtgcagctggagcactggctgaagagcctgtcctcacaagatagagcgatatac
aaagagtacacatcaaataaacgcaaaagcacttcaaaaccaaggggaacaattgccaag
gtgaaggctgtcgtggccaggaaatctgacacagaggaggaggaggatgaggaggatgag
gaggaagaggaaaaagagaaagctgaatcttcagaggaagactcctccagcgatgaggag
agcgagggggaggagaatgaagaggaggaggaaggtgacgaggaggccgacgacaaggag
aacgagtccgagagcagcagcagctcctccagctccgaggagacctcggactccgactcg
gactga
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