Polyodon spathula (Mississippi paddlefish): 121324165
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Entry
121324165 CDS
T07273
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121324165
Spliceosome [BR:
pspa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121324165
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_15
TPR_21
TPR_MalT
PPTA
Motif
Other DBs
NCBI-GeneID:
121324165
NCBI-ProteinID:
XP_041121640
LinkDB
All DBs
Position
12:complement(1552355..1562009)
Genome browser
AA seq
711 aa
AA seq
DB search
METAGQALGGEIAAPMTAIPDSDNSDDCEPLEAVTMVHPDNPENCEITALQEEVEESAPE
KSPDSPANMALEGSPIEVSEEADASPDASRDATAVISEAEDFDVPFPAEYEKFWKVVEEN
PQDFTGWTYLLQYVEQENHLVASRKAFDAFFSRYPYCYGYWKKYADLEKRHGNIKRAEEA
YRQGLQAIPLSVDLWIHYINFLKESLDPSEPETESQLRSAYEHAVLAAGTDFRSDRLWEA
YINWETELGNLREVTAIYDRLLGIPTQLYSHHFQRFREHIQNNLPKQFLSVDEFIKLRRE
LASVNGHGGEDAPPGDDVPPGIEDLADPAKLITEIENMRHRVIESRQEVFNHNEHEVSKR
WTFEEGIKRPYFHVKPLEKAQLNNWKEYLDFEIENGTPERVAVLFERCLVACALYEEFWV
KYAKYLENHSIDGVRHVYMKACTIHLPKKPMVHLLWSAFEEQQGNIEEARGILKTFEETV
PGLAMVRLRRVSLERRHGNLEEAESLLREAIKNGKTASVSSFYSIKLARLLFKVQKSLQR
AREVLLEAIERDEVKSILAHLAAGNQSSPKLYLNLLEIEFSGDLKLNEEHILSCFDKAVN
SSLPVETRISFSQRKVEFLEDFGFDVTRLMTAYDEHQSLLKKQDSLKRKAENGAQEPEEK
KQRAEDTTVETGQMMGGDMQANQSAYNYSSWYQYNYQNPWGYGQYYPPPPT
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagcagggcaggcacttggaggcgaaatagctgcaccgatgacagccatacca
gattcggataactctgacgattgtgagcccttggaggcggtaaccatggtacacccagac
aacccagagaactgtgaaatcacagcccttcaagaagaggtggaagagtctgctcctgag
aaatcaccagacagtcctgcaaacatggcgctggaaggctcccctatagaagtttcagag
gaagcagatgccagtcctgacgccagtagagatgccaccgcagttatctcagaagcagaa
gactttgacgttccttttcctgcagagtatgagaaattttggaaagtggtggaagagaac
ccccaggatttcaccggatggacctacctactgcagtatgtagaacaagagaatcacctt
gtggcgtccaggaaagcgttcgatgccttcttttcacgatatccgtactgctacggctat
tggaagaaatacgctgacctcgagaagcgacacggcaacataaaaagagctgaggaggct
taccggcaaggactccaggcgatccctctcagcgttgacctctggattcattacatcaac
ttcttgaaggaatcgttggaccccagtgaaccagaaacagaaagccagttacgatctgct
tacgaacacgcagtgcttgcagcaggaacggacttccgctcggacagactctgggaggca
tacatcaactgggagacggagctgggaaacttgagggaggttactgccatctacgatcgc
cttcttgggatccctacacagctgtacagtcaccacttccagagattcagagaacatata
cagaacaacttgccaaaacagttcctgtcggtagatgaatttatcaaactgcgcagagag
ctggccagtgtgaatgggcatgggggagaggatgctccaccgggagacgacgtcccccct
ggtatagaggacctcgccgatcctgcaaagcttatcaccgagatagaaaacatgcgtcac
agagttattgagtcccggcaggaggttttcaaccacaatgagcatgaagtcagcaagcgg
tggacgtttgaggaagggattaagcgcccttacttccacgtaaagcccctggaaaaagcc
cagctgaacaactggaaggagtacctggattttgagattgagaatgggacccctgaacgt
gtggctgttctgtttgagaggtgcctagttgcctgtgccctgtatgaggaattctgggtc
aagtatgcgaagtacttggagaaccacagtattgacggagtaagacatgtctacatgaaa
gcatgcactatacatctgcctaagaaacctatggttcatttactctggtctgcctttgaa
gagcagcaaggaaacatagaagaagcgagagggatcttgaagacctttgaagagactgtg
cctgggctggccatggtccgtttacgaagagtgagcctggagcggcgccatggaaacctg
gaggaggcagagtccttgctgcgggaagccatcaagaacggcaaaacggccagcgtgtct
tccttctactccatcaagctggcccgcctgctcttcaaagtgcagaagagcttgcagaga
gccagggaggtgctgctggaggccatcgagagagacgaggtaaaaagcatccttgcacat
ctcgctgctggaaaccagtccagccccaagctgtaccttaacctgctggaaatagagttc
agcggtgacctgaaactaaacgaagagcacatcctctcctgcttcgataaagcagtgaac
agttccctgccagtggagaccagaatatccttttctcagaggaaggtggaatttcttgaa
gactttggctttgatgtcaccaggcttatgactgcatatgatgaacatcaaagtctgctc
aagaagcaggattctttgaaaagaaaagctgaaaatggtgcccaagagccggaggagaag
aagcagcgtgcagaagataccacggtggaaactggacagatgatgggaggggacatgcaa
gccaatcagagtgcatacaactacagcagctggtaccagtacaactaccagaatccatgg
ggttacggacagtactacccaccccctccaacatga
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