Polyodon spathula (Mississippi paddlefish): 121324167
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Entry
121324167 CDS
T07273
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121324167 (casc3)
03015 mRNA surveillance pathway
121324167 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121324167 (casc3)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121324167 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
121324167
NCBI-ProteinID:
XP_041121644
LinkDB
All DBs
Position
12:complement(43454054..43467208)
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AA seq
807 aa
AA seq
DB search
MADRRRRRKRASQDSEDEDESGSGTGTAGSGSAAAKNGARVPEPVAVPPISTRVKADRED
ESECESEDGIEGDVVLSDYESAEENGSRSEAEEEEEGQGGGEEFSQDETPELLAESKPVS
GEQGGAVEETEAAQNKEEKAKEKTLAGERQSGDGQESTESPESKPGDEPGNKLDDDEDRK
NPAYIPRKGLFFEHDVRGAAQEEDMRPKGRHKKLWKDEGRWVHDKFREEEQAPKSREELV
SMYGYDIRHANGPSDLQPQRCRKPRYTDSPLPGRDKRWHDAEKPNRIPWHSGTTTTNNHP
PPPSSQQQHGAPQSSRPYGASCNSTVGSGRISQQPRTFQNSRTAPSNPSPSAYLPHREGR
TNFKPAEQHVCSERERARNYSNNHRTRSKYEPRCSPNVVVEEYQDEGNEEGEWEGRETKE
SYCSRQPQERDFTALSRRKEEEEEEQQQQQQQQEEEEEEEEGSGGVHPDTAFPARDQGGS
SSPLPPSPTVATERTVEKKSYSRARRTRNKASEIGKQASVEEPLPPLQLGGALPDSAQVL
PPQKAQLTPTAHPAVKAESWEPPLEGVGGSGGGGGLEHEMACMNLSAQRSWTSSQPPYIP
GEMRGIPNQMHMGAAPHQYTRIDEMGVGVGRAKRYSSQRQRPVPEPTAMHIGIMEGHYYD
PLPFQGPLYAHSESPTSLPPQGMMVQPEMHLAHPGLHPHQPPAPLPNPGLYAGPPVSMSP
GQPPPGPLLAPAYYSPPGVMTFSNTNFSYPAGATLPPMYPNPQVYGGVTYYSTVQQQAQS
KPSPPRRTSQPVSIKPPPPEGPHLLPE
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggcgacggcggcggaagcgcgcgtcccaagacagcgaagacgaggacgag
tccggttcgggtaccggtaccgcggggtccggttcggccgcggcgaagaacggggcccgg
gtcccagaacccgtggcagtgccgccgatcagcaccagggtgaaggcagaccgggaggac
gagtcggagtgtgagagtgaagatggcatagaaggggatgttgtcttgtctgattatgag
agtgcagaagaaaacggctctcgctctgaggccgaggaggaagaggagggacagggggga
ggagaagagttcagccaggacgagacaccggagctgctagcggagagcaagccggtctct
ggagagcaggggggtgcggtggaggagaccgaggcagctcagaacaaggaggagaaagcc
aaggagaaaacactggccggggagaggcagagtggagatggacaggagagcacagagtca
ccagagagcaagcctggggatgaaccagggaacaagctggatgatgatgaggatcgtaag
aacccggcgtacatcccccgcaaggggctgttcttcgagcacgacgtgaggggggcggcg
caggaggaggacatgcggcctaaggggcgccacaagaagctgtggaaggacgagggccgc
tgggttcatgacaagttccgcgaggaagagcaggcgcccaaatcccgcgaggagctcgtc
tccatgtacggatacgatatccgccacgcgaacgggccctccgacctccaaccccagcgc
tgccgcaaacccaggtacacggacagcccccttccggggcgggacaagaggtggcacgat
gcggagaagccaaaccgcattccgtggcactccggcaccaccaccaccaacaaccacccc
cctcctccctcatcgcagcagcagcacggcgcaccccagtcctcgcggccttacggggca
tcctgcaactccacggtggggtccggacgcatctcccaacaaccacgcaccttccagaac
agcaggactgcccccagtaacccctcccccagtgcttacttaccgcacagagaaggacgc
acgaacttcaagcctgcagaacagcacgtttgcagcgagcgagagcgcgccagaaactac
agcaacaaccaccgcacccgctccaaatacgagccccggtgttctcctaacgtagtggtg
gaggagtatcaggatgaagggaacgaggagggggagtgggagggaagagagacaaaggag
tcttattgttccagacagccccaggagagggatttcacagccctgtcccggaggaaggag
gaggaggaggaggagcagcagcagcagcagcagcagcaggaggaggaggaggaggaggag
gagggcagcggcggtgttcacccagacactgctttcccagccagggatcagggtggctcc
tcctcccctctccctccgtctcctaccgtggctactgaaaggactgtggaaaagaagtct
tattcccgagcccggaggacccggaataaagcctcggagatcgggaagcaggcgtctgtg
gaggagcccctgccccccctgcagctcgggggggccctgccggactctgctcaggtgctc
ccccctcagaaggcccagctgacccccacagcccacccggcggtgaaggcggagtcctgg
gagccccctctcgaaggggtgggagggtcgggcggcggtggggggttggagcacgagatg
gcctgcatgaacctgagtgcacagaggagctggacctcgagccagcctccctacatcccc
ggagagatgaggggcattcccaatcagatgcacatgggagccgcccctcatcagtacacc
aggatcgacgagatgggtgtgggcgtgggcagagcaaagcgttactcctcccagcggcag
cgcccagtccccgaacccactgccatgcacatcggcatcatggagggacactactacgac
ccgctacctttccaaggaccactctacgctcatagtgagagccccacctccctcccccct
cagggcatgatggtccagcccgaaatgcacctggcacacccaggtctgcaccctcaccag
ccacccgccccacttcccaaccctggtctgtacgccggcccccccgtctctatgtctcca
gggcagccccccccaggaccgctcctcgcacccgcgtactactcccccccaggggtcatg
accttcagcaacacaaacttctcctaccctgctggggccacattgccccctatgtacccc
aatcctcaggtgtatggcggggtcacgtactacagcacggttcagcagcaggctcagtcc
aaaccctccccgcctcgcaggacctcccagccagtctccatcaagccccctccccctgag
ggcccacacctgctcccggagtag
DBGET
integrated database retrieval system
