Polyodon spathula (Mississippi paddlefish): 121324185
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Entry
121324185 CDS
T07273
Name
(RefSeq) interferon a3-like
KO
K05414
interferon alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04060
Cytokine-cytokine receptor interaction
pspa04217
Necroptosis
pspa04620
Toll-like receptor signaling pathway
pspa04621
NOD-like receptor signaling pathway
pspa04622
RIG-I-like receptor signaling pathway
pspa04623
Cytosolic DNA-sensing pathway
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
121324185
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
121324185
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121324185
04621 NOD-like receptor signaling pathway
121324185
04622 RIG-I-like receptor signaling pathway
121324185
04623 Cytosolic DNA-sensing pathway
121324185
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121324185
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
pspa04052
]
121324185
Cytokines and neuropeptides [BR:
pspa04052
]
Cytokines
Interferons
121324185
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Interferon
DUF7603
Fib_alpha
Motif
Other DBs
NCBI-GeneID:
121324185
NCBI-ProteinID:
XP_041121683
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All DBs
Position
12:42249706..42251981
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AA seq
192 aa
AA seq
DB search
MGRNMFALCFVLSLLCGCCSSLGCKWIKDDLYKPTSVETMNLLKHMGKEFVKERAHMHIP
PKAYKIHRNIKLGDNVFELHEAFLNISKIFNLNKDSVPTWNRTALDTFRNNLYRQAKELK
SCMQEMKYSDNRRSTETKTLESYFKKLEHFLENKNYSAQAWEVIRIQVQDNLQRMDRFTA
HIRTHMMDNSNV
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgggccgaaatatgttcgcattgtgctttgtactgtcgctattatgcggctgctgctca
tcgctaggatgcaaatggatcaaggacgacctgtacaaacccaccagcgttgaaaccatg
aacctgctgaaacacatgggcaaggagtttgttaaagaaagagcacacatgcatatccca
cctaaagcttacaaaatacatagaaatataaagctgggagacaatgtgtttgagcttcat
gaagcatttcttaacatcagcaagattttcaatttaaataaagactcggtgccaacatgg
aacaggactgcactggatacctttagaaacaacctctaccgacaggctaaagaactgaag
tcttgtatgcaggagatgaagtactccgacaacagacgatctactgaaaccaagacattg
gagtcatattttaagaagttagaacattttttggaaaacaagaattactctgctcaggcc
tgggaggttatcagaatacaagttcaagacaatttgcaaaggatggatcgattcactgct
catattagaacacacatgatggataattccaatgtttaa
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