Polyodon spathula (Mississippi paddlefish): 121324255
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Entry
121324255 CDS
T07273
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121324255 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121324255 (dhx8)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121324255 (dhx8)
Spliceosome [BR:
pspa03041
]
Complex C
Other components
Step II factors
121324255 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
T2SSE
Cas3-like_C_2
PhoH
Sigma54_activ_2
TsaE
Flavi_DEAD
ABC_tran
CDC45
Motif
Other DBs
NCBI-GeneID:
121324255
NCBI-ProteinID:
XP_041121868
LinkDB
All DBs
Position
12:41102344..41127418
Genome browser
AA seq
1196 aa
AA seq
DB search
MADGGVDELQKLEYLSLVSKVCTELDNHLGISDKDLAEFVINLAEKNPTFDSFKGDLIKN
GAEFTDSLISNLLRLIQTMRPLAKTSSRKGMDPVVKPKSEKEKLKELFPALCCPDNPNIR
IMLDDDDVKVAADAMKELEAFMPSTSKEKPRSSRHRSDDGGKRKKRSQDRDRERDRDRDR
KRRHRSRSRSRSRSWDRGKGKSRRRSWSRSPSREHRDKDKGVDRWKDKHVDRPPPEEPTV
GDIFNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVL
SFTGSKTSLSMKDVDQDTGEDLNPNRRRNMGGEGSEETTMRNPDRPSHMSLVSMPEVEDD
TLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEE
EPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQREAEMDSIPMG
LNKHWVDPLPDADGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQMSILEQRES
LPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIGCTQPRRVAAM
SVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLGQYAIIML
DEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPV
EILYTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTGQEEIDTACEILYERMKSLGPDV
PELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKV
YNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTN
LASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFP
LEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQPEGDHLT
LLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQ
KAICSGFFRNAAKKDPQEGYRTLIDSQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMRE
VTTIDPRWLVEFSPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggtggagttgacgagctgcaaaaactcgaatacctttccttggtttccaag
gtttgtactgaattggataaccatctcgggatcagcgacaaagatttggctgaatttgtg
ataaacctggctgagaagaaccccacatttgattccttcaaaggagatctgattaaaaat
ggagcagaattcacagattctcttattagcaatttgttgcgactcatacaaacaatgcga
cctctggcaaagacatcttcaaggaaagggatggatccagtggttaaaccaaagtctgaa
aaagagaagctgaaggagctattcccagctctgtgctgtccagataatcccaatataaga
attatgcttgatgatgatgatgtgaaagtagcagctgatgccatgaaagaacttgaagcg
ttcatgccgagcaccagcaaagaaaaaccaagaagcagtagacaccgttctgatgatggt
ggaaagagaaagaaacggagccaagatcgagacagagaaagggacagggaccgtgacagg
aagaggcgtcaccgctcccgctccaggtccaggtctcgctcctgggacagagggaaaggg
aaatcccgccggcgatcttggagcaggagccccagcagagagcaccgggacaaagacaag
ggagtcgaccggtggaaagacaagcatgtggaccggccacctcccgaggaacccacagtg
ggagacatcttcaacggcaaagtcaccagcatcatgcagtttggctgctttgtgcagctg
gagggactgaggaaacgatgggaaggattggttcacatctcggaactcagaagagagggg
agagtcgccaatgttgcagatgtggttagcaaaggtcaaagggtaaaggtcaaggtgctg
tcctttactggatctaaaaccagcttaagtatgaaggatgtggaccaggacactggtgaa
gacctgaaccccaacaggcgtcggaacatgggtggagagggcagcgaggagacgaccatg
cggaacccagaccgacccagtcacatgtccctagtcagcatgcctgaggtggaggacgac
acgctggagcgcaaacggctcacaaagatctctgacccagagaaatgggagatcaaacag
atgattgcagccaacgttctctctaaggaagagtttccagattttgatgaagagactggt
attctccctaaagtcgacgacgaagaagatgaagacctggagattgagcttgtggaggaa
gagccgccgttcctgaggggacacaccaagcaaagcatggatatgagtcccgtgaagatt
gtaaagaatcccgatggctccctgtcccaggctgctatgatgcagagtgcgctggcaaag
gaaaggagagaggtgaaacaggcccagcgtgaggctgagatggactccattccaatgggg
ctcaataaacactgggtagatcccttacctgatgccgatggcaggcagattgcagccaac
atgcgaggtattgggatgatgcccaacgatatcccggagtggaagaaacatgctttcgga
ggcaataaggcatcttacggcaaaaagacgcagatgtcaatcctcgagcagagagagagc
ctgccaatctacaagctgaaagagcagctcattcaggcagtccacgataaccagattctg
attgtgattggagagactgggtcaggtaagacgacccagatcacacagtacctggcggag
gctggctacaccaccagggggaagatcggctgtacccagcctcgacgtgtggctgccatg
tctgtcgccaagagagtatccgaggagtacggttgctgtttgggccaggaggtgggttac
actattcgatttgaagactgtacgagccctgagactgtcattaagtacatgacagacggt
atgttgctcagagagtgcctgattgaccccgaccttggccagtatgccatcatcatgttg
gacgaggcccacgagcggaccatccacactgatgtgctctttgggctgctcaaaaagact
gtgcagaagcgcactgacatgaaactgattgtgacgtcagccacactggatgctgtgaag
ttctctcagtatttctatgaagctcccattttcacgatccctggaagaacataccctgtg
gagatcctgtacaccaaggagccggagacagactacctggatgccagccttatcactgtg
atgcagattcatctgactgagcctccaggtgatgttctagttttcctgactggtcaggag
gagattgacactgcctgtgagatcctgtatgagagaatgaaatccctggggccagatgtc
ccagagttgatcatccttcctgtctactctgctctacccagtgagatgcaaactagaata
tttgatccggcgccgcctggcagcagaaaagtggttattgctacaaacattgcagagaca
tccttgaccattgatgggatttactacgtggtggatccaggatttgtaaaacagaaagtg
tacaattcaaagactggaattgatcagctggtggtgactccaatttctcaggcccaggct
aagcagagagcaggcagagctggcagaacaggccctgggaagtgttacaggctgtacacg
gaacgtgcatacagagatgaaatgctgaccacgaacgtgcctgaaatccagagaactaac
ttagccagcactgtgctgtcattgaaggctatggggatcaatgacctgctgtccttcgat
ttcatggacgcccccccaatggagactctgatcactgcaatggagcagctgtacaccctt
ggcgctctggatgacgaggggctgctcacgcgcctggggcgcaggatggctgaatttcct
ctggagcccatgctgtgtaaaatgctgatcatgtccgtccatctgggctgcagtgaggaa
atgctgaccatcgtctccatgctttcagtgcagaacgtcttctacagaccaaaggacaag
caagcacttgctgaccagaaaaaggccaagttccaccagcctgagggagaccacctcacc
ctactggctgtctacaactcctggaaaaacaacaagttctccaacccctggtgttacgag
aacttcatccaggctcgatccctgcgccgggcacaggacatccgtaagcagatgttgggc
atcatggacaggcataaactggatgtggtatcttgtggcaaagctacagtcagagtgcag
aaagcaatctgcagtggtttcttcagaaatgcagctaaaaaggaccctcaagaaggctac
aggacccttattgattcacaagttgtctatattcacccatctagcgcactttttaataga
caaccagagtgggtggtgtaccatgagttggtactgaccacaaaggaatacatgcgagaa
gtgaccaccatagaccctcgctggctggtggagttttctccagccttcttcaaagtgtcc
gatccaaccaaactcagcaagcagaagaaacagcagagactggagcctctgtacaaccgc
tacgaggagcccaatgcctggagaatctccagagccttcagacgccgctag
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integrated database retrieval system
