Polyodon spathula (Mississippi paddlefish): 121324280
Help
Entry
121324280 CDS
T07273
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121324280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121324280
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121324280
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121324280
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121324280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
121324280
NCBI-ProteinID:
XP_041121926
LinkDB
All DBs
Position
12:complement(23771754..23811849)
Genome browser
AA seq
558 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSTEEATNGKKSYWAELEISGRVRSLSTALWSLTHLTALHISD
NCLARIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLVNNNLLRVLPFELGKLF
QLQTLGLKGNPLAQEVLNLYQEPDGTRRLLNYLLDNLAGTTKRIPTELPPSRSWIVLQEP
DRTRAAALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKLIMQEILSCNADIISLQE
VETEQFFTYFLVELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKSDKFNLIQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAALLELRKELMEMSSGKSLHGMEKQLILVANA
HMHWDPEYPDVKLVQTMMFLSEVKNIIDKASRSLKLSSVSGEANAIPLVLCADLNSLPDS
GVVEYLSTGGVDTTHKDFKDKRYSDSLTNFNCNGKNGTSNGRITHGFKLKSAYENGLMPY
TNYTFDFKGVIDYIFYSKPLLNVLGILGPLDPHWLIENNISGCPHPHIPSDHFSLFAQLE
LILPYLPPVNGIHLPGRR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatccgcctgatccacggcggatgtacacaataatgtcaact
gaggaagcaaccaatgggaagaagtcatactgggcagagttagagatcagtgggagagta
aggagcttaagcactgcactgtggtcacttacacatttgaccgcgttgcatatcagtgac
aattgcctagcccgcattccaccagatattgccaaactccataatctggtctacttggat
ttgtcctccaataagattaggagtctaccagcggagcttggaaacatggtgtcactcagg
gaactgcttgtaaataacaacctgttacgggttctaccttttgagctgggaaaactgttt
cagttgcaaacactggggttgaaaggaaacccacttgcacaagaagtcttgaacctatat
caggaaccagatggaacgcgaaggctactgaattacttgcttgataacttggctggtacc
acgaaaagaataccaacagagctgcctccttcaaggtcatggattgtgttgcaagaacct
gaccgaacacgggctgcagccctgttttctgtaatgtgttacaatgtactttgtgacaaa
tatgctacccgacagttgtatggctactgtccatcgtgggcactgaactgggagtacaga
aagaaattaataatgcaggaaattttgagctgtaatgcagacatcataagtcttcaggaa
gttgaaacggagcagttcttcacctattttctggtggagctcaaggagcaaggctacgat
gggttcttcagcccgaaatcccgagctaggacaatgtccgagtctgataggaagcatgtc
gatgggtgtgcaatattttacaaatcggataaatttaacttaatccaaaaacacactgtt
gagttcaaccagctggccatggcaaactctgagggttcagaagcaatgctgaacagagtg
atgacaaaggacaacattggcgtggcagcattgttagagctgcgtaaagaactcatggaa
atgtcatctgggaagtcccttcacggtatggaaaagcagttaatccttgtggctaatgca
cacatgcactgggatccagaataccccgatgtcaagttggttcagaccatgatgttcctc
tctgaggtcaaaaacattattgacaaggcttctcgcagtctaaaattgtcatcggtttcc
ggagaagcaaacgccatcccacttgtactttgtgctgatctcaactccctgccggactct
ggtgttgtggaatacctgagcactggaggggttgacacaactcacaaggattttaaagac
aagcggtacagcgacagtctgaccaacttcaactgcaatgggaagaatggaacttcaaat
ggaaggataactcatggctttaagctgaagagtgcctatgagaatggccttatgccttac
actaactacactttcgacttcaagggtgttatcgactacatcttttactccaagcctctg
cttaatgtattgggcatcctcgggccactggaccctcactggcttattgagaacaatatc
agtggttgtccgcacccacacatcccttctgaccacttctctctttttgcacaactggag
cttatactgccctatcttcctcctgtcaatggaatccaccttcctggcaggaggtag
DBGET
integrated database retrieval system
