Polyodon spathula (Mississippi paddlefish): 121324303
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Entry
121324303 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: nesprin-2-like
KO
K19326
nesprin-1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121324303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121324303
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Centrosome formation proteins
LINC complex
121324303
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
KASH
SYNE1
Spectrin_SYNE1
SR_desmoplakin_3
Motif
Other DBs
NCBI-GeneID:
121324303
NCBI-ProteinID:
XP_041121945
LinkDB
All DBs
Position
12:complement(3842290..3883686)
Genome browser
AA seq
1846 aa
AA seq
DB search
MWSTLRVRRVELKENLTTEIQYESLLQSLSNLVDAGHEKLTHSQHLVLPSHAELKNHLKK
HKNYFYNLGNHLAAVERFSQKVPVALARKHDKFWLDLEEEILCLQQQALQHGIHIQSMLQ
AWTQFDKSSTVLLKQLQELEARIPTVGLVEESEERLLERLAIYQQIKGSLDENCSRLSHR
LTNGKKLLTTVSCTELNSLLHQLEEKWLTVMNRVNQDRHCLETLTKYWTSCRKGSIDLSV
WMTSAMDRLKTLKQQSLSVPQDLEKVRDHLGRFLEFMEEVDAKSSLKLSVISTGNQLLQV
KRANTPSLQNQLARFEQGXTEVLTPLPGNKEKLHQLQMEKVPSRQVITELKTRMSKIHGL
LREDEEKISHLSAIASAKEILQKYKVIQTKASLQSIVQQWKAFDETFQEMDLNIVKARRA
VIPLCCLSNGMTSPFSPFQSLQEDAEKNEEQWNALSSAFTTFKTMCSPTAVQLITENLED
ACTRWTAAIQESSDELRKAQSLYELWQKYRDRFADSTLLLKTHKEKCSKLSSAVPSEENT
VDFKQRKIDTINKLVNETENMQSSTVQVSETLKELTQQVDPPAAILIESEVTDLSNRLVQ
LGKLLAIKLSEHQTRMLQLNAMTPDLEYLNDLSYKIPLNEMNIKRAQTLNRQWAQASSWA
LQRCSELQGVILHKQNFVQKCENWMKFLEKMEESLAVDIAGCYAGLKEQQRIREVITWMF
PSFFPLNDDSLAKNSEFMAESLFDFLKPLECGYVLCFFFKFYFVSWENCEKKINEFGCRL
QDIKIKVSEPLSQVHEELQVTEKLTKEAEESLEDWTRSLAELTTMKTDLSQYIITDDVVI
LQEQIQHLHSQWDELCLKVSLRKQEIADRLNAWIIFNEKNKELCEWLTQMENKVSHNAAE
LSIEGMIEKLKKDCMEEINLFSENKTHLKLLGEQLINASNKTKETEINDKLKDINGRWQH
LFDHIEARVKKLKDTLVTVQQLDKNMSNLRTWLSRIEAELSKPVVYNICDNDEIQKKLSE
QQDLQRDIEQHTDGVASVINLCDVLLHDSDACATETECDSIQQTTMSLDRRWRNICAMSM
ERRMKIEETCRLWSKFLDDYSRFEDWLKTAERCAACPNSAEVLYTSAKEELKKFEAFQRQ
VHERLTQLELVNKQYRCLARENRTDVASQLKLMVHEGNQRWGNLQKRVTAILRRLKYFTS
QREEFEGTRDGILVWLTEMDLQLTNVEHFSESDIEDKMRQLDGFQQEITLNTNKIDQLIV
FGENLIQKSQPLDAVLIEDELEELHTYCQEVFGRVARFHHRLINKGPVSEDEKESSDRDT
DLEDSVELQGIGWQEKVRPEAFPSCQSTCQLMPPTPGQEQSGRETPVSVDSIQLEWDHTV
DVGGSSSHEDEEEPVYYSALSVKSSSEPPSWHSPDHQDSRKQRIQTEIIRTLSSTSLITS
TPYKMGYVKLMSECSGSIDSVKRVKLILNDEEQLEEQGLVGLTTAESGVIECWELIQAQA
LSNKLRIKQNLQQWQQLNSDLDDITFWMKKIEPELDELQKLEPSTSIRDIEGNIKKLKEI
QKAFDNFKSVVISLNLISKDFQQADSAKSQELHDRLELMNQSWVRACNKLDCWKEGLQTA
LMQCQDFHETTHDLLLWLAHAVSRRYTVDLADSNIESCVLQEHQKTLMQLEDDLLEKQLQ
VSSLQEISTHLLVKADEEDHIEAKEKVHVIENKLKLLLREVSRDMQTIQKKLDTCSSFAS
LDEVDRNDTAMTSTPPSQIKEASEETITATKASSNTRTGRQESSPPCSFFYRVLWAAFPL
QVLFLLFLVLACMVPLTEEDYSCTLSNNFARSFYPMLRYTNGPPPT
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcaccctgagagtcagacgagtagaactcaaagagaaccttaccactgagatt
cagtacgagagcctgttacagagcctgtccaacttagtggacgctggtcacgagaaactc
actcacagccagcaccttgtcctgccaagccatgccgagctgaagaaccacctgaagaaa
cataaaaattacttctataaccttggcaaccacctggctgctgtggagaggttctctcag
aaagtaccagtagctttagcaaggaagcatgacaagttttggttggatctggaggaagaa
atactctgtctccagcagcaagctcttcagcatggaatacacatccagagcatgttacaa
gcctggacccagtttgacaaaagttctacagtgcttttaaaacagctgcaggaactggaa
gccaggatacctacagtaggactggtggaggaatccgaagaaagattactagaacgacta
gcaatctatcagcaaattaaaggtagtctggatgaaaattgctcaagactctcccataga
ctgacaaatgggaagaaactgttgacgacagtgagctgcacagaactgaattcccttctg
catcagctggaggagaagtggctgactgtaatgaatagagtcaaccaggaccgccactgc
ttagagacgctaacaaaatactggacaagctgtaggaagggctccattgacctgagtgtg
tggatgacgtctgcaatggacagactgaagactttgaaacagcagtccctcagtgtgcct
caggatctggagaaagtaagagatcacctcggacgattcctggagttcatggaggaagtg
gatgccaagtcgtctctgaagttgtctgtgatcagcacagggaaccagctgctccaggtg
aaacgggccaacactccctcgctgcagaaccagctggctcggtttgagcagggatgaaca
gaggttctcactcccctgccaggaaacaaggagaaactgcaccagctccagatggagaaa
gtgccttctcgtcaggtgatcacagagctgaaaacccggatgagcaaaattcatgggctt
ctgagagaagatgaggaaaagatcagccacctgtctgctatagccagtgcaaaagagatt
cttcaaaagtacaaggttattcagacaaaagcatcgctccagtcgattgtgcagcaatgg
aaagcatttgatgaaacattccaagagatggacttgaatatagtcaaggccaggagagca
gtcattcccctgtgctgtctttccaatggtatgacatctccattctctccctttcagtct
ctgcaggaagatgctgagaagaatgaagagcaatggaatgcactcagcagtgctttcacc
acctttaaaaccatgtgcagccccacagcagttcagctgatcactgaaaacttagaagat
gcatgtacaaggtggactgcagcaattcaagaatcctcagatgagctccgaaaggctcag
agtttatatgagctttggcagaagtacagggatcgcttcgctgacagcacgttgctgctc
aagacacacaaagagaagtgcagtaagctttcaagcgccgtcccttcagaagaaaacaca
gtggatttcaagcagagaaaaatagacactattaacaaactcgtgaacgagactgaaaac
atgcaaagcagcacagtccaggtttcagagactttgaaagaactaacccaacaggtggat
cccccagcagctatattgattgaatctgaagtaacagacctgtccaacagactggtgcaa
ttggggaagcttcttgcaattaagctgtctgagcatcagacgcggatgctacaactgaat
gccatgacccctgacctggaatacttgaatgacctcagctacaagatccctctgaatgaa
atgaacatcaagagagcgcaaaccctgaacagacagtgggctcaggcctcatcctgggct
ctgcagagatgcagtgaactacagggagtcatcttacacaagcagaactttgtccagaaa
tgtgagaactggatgaagttcttggagaagatggaagagagcttggcagtggacattgct
ggttgctatgcaggccttaaggaacagcagagaattcgtgaggtgatcacgtggatgttt
ccgtcattttttcctctaaatgacgattccctggcaaagaattcagaattcatggctgaa
agcctatttgattttctgaagcctttggagtgtggttatgttttatgttttttttttaaa
ttttattttgtgagctgggagaattgtgaaaagaaaataaatgaatttggatgcagactt
caagacatcaagattaaagtgtctgaaccactttcacaagtgcatgaagagttacaagta
acagaaaaactaactaaggaggcagaggaatcattagaagactggactcgaagccttgca
gagctgaccactatgaagacagacctgtcccagtatattatcacagatgatgtggtgatt
ctgcaagaacagatccaacatttacacagccaatgggatgaactctgtttaaaagtgtct
ctgaggaagcaggagatagctgacaggcttaacgcatggatcatcttcaatgaaaagaac
aaagagctttgtgaatggctgacacagatggaaaacaaagtatcacacaatgctgccgag
ctcagcattgaaggaatgatagagaagttgaagaaggactgcatggaagaaatcaatctt
ttcagtgaaaacaaaactcatttgaagctactgggtgagcagctgatcaatgccagcaat
aaaactaaggagacagaaataaatgacaagttgaaggatatcaacggccgctggcagcat
ctgtttgaccacatcgaggcaagggtgaagaaactgaaggacaccttggtgacagtccag
cagctggataagaacatgagtaacctccggacatggctgtctcgcattgaggctgagctc
tccaagcctgtggtttacaacatctgtgataacgacgaaatccagaagaaactttccgag
cagcaggatctgcagcgtgatatcgagcagcacacagacggcgtggcgtctgtgattaac
ctgtgtgatgtcctcttgcatgactcggatgcctgtgccactgaaacagaatgtgactcc
atccaacagacaaccatgagcctggacaggcgatggaggaatatctgtgccatgtcaatg
gagagaagaatgaagattgaggaaacctgccggctttggtccaagtttctggatgattat
tctcgttttgaagactggctgaaaacagctgagagatgtgctgcctgccccaactctgca
gaggttttatacaccagtgcaaaagaagaactgaagaaatttgaggcatttcagagacag
gttcacgagaggctcacccagctggagctggtgaacaagcagtaccgatgtctggctaga
gagaaccgcaccgacgtggccagccagctaaagctcatggtccacgagggaaaccaaaga
tggggcaatctccagaaaagggtcactgccattctgagaagactgaagtacttcacctct
cagcgggaggagtttgaaggaacacgggacggcatccttgtgtggctgactgagatggac
ctgcagctgaccaacgttgagcacttctcagagagcgacatcgaggacaagatgaggcag
cttgacggatttcagcaggagatcaccctgaacaccaataagattgaccagctgattgtg
ttcggggagaacctgatccagaagagccagcctctggatgctgtgctgattgaggatgag
cttgaggaacttcacacctactgccaggaagtgttcgggagagttgctcgcttccaccac
agactcatcaacaagggcccggtctcggaagatgaaaaggagtcctctgacagggacaca
gaccttgaagactcggtagagctgcagggtatcggctggcaggagaaggtgaggcccgag
gcctttccctcttgccagtccacttgtcagctgatgcccccaacgcctggacaggagcag
tccggccgcgagacccccgtcagcgtggactccatccagctggagtgggaccacaccgtc
gacgtggggggctcttcatcccacgaagatgaggaagagccagtttactacagcgcactg
tcagtaaaaagctcctctgagccaccgagctggcactcgcctgatcaccaggacagcagg
aagcagagaatccagaccgagatcattcggaccctctcctccacctccctaatcactagc
acaccttataaaatgggatatgttaagttgatgtctgagtgcagtggcagcatcgatagt
gtaaaacgagtcaaactgatactgaatgatgaggaacaactggaagagcaagggcttgta
ggcctgaccactgcggagtcaggtgttattgagtgctgggagctgattcaagcccaggcc
ctcagcaacaaactgaggataaagcagaatctacagcagtggcagcagctcaactctgat
cttgatgacatcactttctggatgaaaaaaattgagcctgaactggatgagctacagaaa
ctagagccttccacaagcattcgggatatagaaggcaacattaagaaactcaaagaaatt
cagaaggcttttgacaacttcaagtcggtagtcatctccctcaatctgatcagcaaagac
ttccagcaggcagacagtgccaaatctcaggagctgcatgacaggctggagctaatgaac
cagagctgggtgcgagcctgcaataaactggactgctggaaagagggattgcagaccgca
cttatgcagtgtcaggactttcatgaaaccacacacgatctgctgctgtggcttgcacat
gcggtgagcagaaggtacaccgttgatctcgctgattccaatatcgagtcctgcgttctt
caggaacatcaaaaaacactaatgcagctggaagatgacttgctggaaaagcagttgcag
gtcagctctctgcaggagatctctacccatcttctggtaaaagccgatgaggaagaccac
atagaagccaaagaaaaagtgcatgtcattgaaaacaagctgaagctgctcctgcgggag
gtttctcgggatatgcagacgattcagaagaaactggatacatgctcttcctttgcatcg
ctggatgaagtagaccgcaacgatactgcaatgaccagcactccaccttcccaaatcaag
gaggcaagtgaggaaacaataacagcaaccaaggcctcctcgaataccaggactgggaga
caggagtcctccccgccatgctccttcttttaccgtgtgctgtgggcggccttccccctc
caggtactctttctccttttcctggtactcgcctgcatggtgccactcactgaggaagac
tacagctgtaccctgtcaaacaactttgcaaggtccttctaccccatgctgagatacacc
aacggaccccctcccacatga
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