Polyodon spathula (Mississippi paddlefish): 121324311
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Entry
121324311 CDS
T07273
Name
(RefSeq) lymphoid enhancer-binding factor 1-like isoform X1
KO
K02620
transcription factor 7
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04310
Wnt signaling pathway
pspa04520
Adherens junction
pspa04916
Melanogenesis
pspa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121324311
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121324311
09150 Organismal Systems
09152 Endocrine system
04916 Melanogenesis
121324311
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121324311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121324311
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG TCF-1
121324311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CTNNB1_binding
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121324311
NCBI-ProteinID:
XP_041121954
LinkDB
All DBs
Position
12:complement(34049868..34098628)
Genome browser
AA seq
517 aa
AA seq
DB search
MPQLNSGGGDDLGANDEMIAFKDEGEQEEKIQENALTERDLADLKSSLVNESEISQNAGS
VADPGAIRRARAEEERAYTDNLARDHLEDLSKRQDGGMYKGHAYSGYPFLMLPDPYLQNG
SMSASSNKVSVVQQSHGMHPLTSLLPYSNDHFNPNSPHLPADMSQKPGVHRPQSQDLSGF
YSLPPGGVGQITPPMGWQSQPVYPITPCGFRQPYSSGLSAGSSFSRFPHSLMLGPPGMHS
TGIPHPAIVPPSGKHEHDQYDRNMYVKQHQEPKREKEPKKPVIKKPLNAFMLYMKEMRAK
VIAECTLKESAAINQILGRRWHALTREEQAKYYELARKERQLHMQLYPSWSARDNYETNL
KGGSGEKNKADWGKKKRRKREKQPDSNLDPGSPKKCRARFGLNQQTDWCGPCRRKKKCIR
YLQRGGCTSPDSSDGSAIDSPLSPTEAHPHLRQTPEDLAGYADSFLQEQTPFDLSANTKT
TGLSVPSSLDTRHRLPMTCQPSSSSSSSVYSATITQT
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgccacagttaaatagtggtggaggagatgatctgggagctaacgatgaaatgattgcc
ttcaaagatgaaggggagcaagaggaaaaaattcaagaaaacgcgttaaccgagagagac
ttggcagatcttaagtcttctttggtgaatgaatctgagatcagccagaatgccggcagt
gttgcggaccctggggcaatccggcgtgcacgtgcagaagaagagagagcctacacagac
aatcttgctcgggatcacctggaagacctgtcgaaacgtcaagatgggggaatgtataaa
ggacatgcatattctggatatccgttcctgatgctgcctgatccataccttcagaatgga
tctatgtctgcatcgtccaacaaagtgtccgtggtgcagcagtcccatgggatgcatcca
ctcacctccctcctcccctacagcaacgatcacttcaacccaaactcaccgcatctacct
gcagacatgagccagaagccaggcgttcacaggccccagtcacaggacctctcgggattc
tattccctccctccaggtggtgtgggacagatcacccctcccatgggatggcaaagtcag
cctgtttatccgatcactccctgcggattcaggcagccgtactcctcagggctctctgcc
ggctcctccttctccaggtttcctcactcactgatgctgggtcctccaggcatgcattct
acagggatccctcacccagcaatagtgcctccttcaggcaaacatgagcatgaccagtat
gacagaaacatgtatgtgaagcaacatcaagagccaaagagggagaaggagcccaagaag
ccagtgatcaagaagcccctgaatgcgttcatgctgtacatgaaggagatgcgggccaag
gtgatcgcagagtgcaccctgaaggagagcgccgctatcaaccagatcttggggagaagg
tggcatgcccttaccagagaagaacaagccaagtactatgagctggccaggaaagaaagg
cagctccacatgcagctgtacccaagctggtcagccagagacaactatgaaacgaacctt
aaagggggatcgggggaaaagaataaagcagattggggcaagaagaaaagaagaaaaaga
gagaagcagccagactccaacttagaccctggctctcctaagaaatgccgagctcgcttc
ggcctcaatcaacaaacggactggtgtggcccctgcaggaggaaaaagaagtgcattcgc
taccttcaaagaggagggtgcaccagccccgattcttccgatggaagtgctatagactct
cccctctctcccactgaagcccatcctcatctacgacaaactccagaagaccttgctggc
tacgcagactcattcctacaagaacagacccccttcgacctttcagctaacaccaagact
actggactgtcagtaccaagttcactggacacacgacatcgcctgccaatgacatgccag
ccttcatcgtcatcatcatcatcagtgtacagtgccactatcacacaaacatag
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