Polyodon spathula (Mississippi paddlefish): 121324327
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Entry
121324327 CDS
T07273
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04140
Autophagy - animal
pspa04148
Efferocytosis
pspa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121324327
04148 Efferocytosis
121324327
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121324327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121324327
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121324327
Hops complex
121324327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-ANAPC11
zf-RING_11
zf-RING_16
DUF5600
DREV
KNOX2
DUF1664
zf-rbx1
zf-C3HC4_2
DUF2175
DUF4446
zf-RING_UBOX
zf-C4H2
LETM1_C
Motif
Other DBs
NCBI-GeneID:
121324327
NCBI-ProteinID:
XP_041121985
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All DBs
Position
12:complement(11442459..11449987)
Genome browser
AA seq
979 aa
AA seq
DB search
MASILDEYEDSQTIRHSTQQPHTRLSASNIGITHSGFVNARLEEERPIFNKQRIDFSPPE
NINHFAVCNNQLCMSLGKDTLLRIDLGKPDQPNQVELGRKDDAKVHKLFLDPTGSHLLIS
LNTNECLYLNRNTQKVRSLSRWKGHLIESIGWNKLLGTETNTWPILVGTSQGQIYEAEIS
ASEGSLFNTNPDQYFRLVYTLDEDGKSAPVCCLEIERGIESKFFIIATTRKRLFQFVGKV
PEGAEQQGFSSIFSQNADHFPSFQEFPANLGFSEIAFYTPKLRTSPRSFAWMMGNGVLYG
TLDYTRPDSLLSDVQVWEYPPDIDFNFNKPISIVLTQFHFLLLLPDRVKAVCILNGQVVY
EDVFPDKFGPLKNMSKDSACGLVWIYTEKAVFRYHIQREARDVWQMYMSMSKFDLAKEYC
KDRPECLDIVLAKEAEHCFQNKKYLESAKCYALTQNYFEEIALKFIEAKQEDALKEFLMK
KLNNLKPSEKTQITLLVTWLTELCLNRLGTLEGDESKRSLFLESREQFRKFLSSSKIKEC
LYNNRTTIYDLLASHGNVEDMVFFSVIMQDYERVISHYCQHDDYEAALEVLSKHRDEKLF
YKFSPVLMQHIPKKVVDAWIQMGKKLDSKNLIPALVNYSQIGSTEQINETVRYMEFCVYE
LAVTEEAIHNYLLSLYAKYKPESLLLYLEQTGTHSSDIHYDLKYALRLCAEHGHHKACVH
VYKIMELYEEAVDLALQVDVDLAKSCANLPEDDEELRKKLWLKIACHVVQEEKDVKKAMN
CLSSCNLLKIEDILPFFPDFVTIDHFKEAICNSLEEYNKHIEELKQEMEEATESAKRIRE
DIQEMRNKYGVVESQEKCAACDFPLLNRPFYLFLCSHMFHYDCLLQEVSPHLSAYKQTKL
EELQKKLLTTSQPTKSRHQLKEEDTASLGKGQLSRQQIKSHIDDIIAAECVYCGELMIKS
IDKPFIDPQKYEDGKSSWL
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaatacttgatgaatacgaagactctcagaccattcgtcactcaacgcagcag
ccgcatacccgcctttcagcatctaacattgggattacacactcaggatttgtaaatgcc
agattggaggaagagaggccgatattcaataagcagaggattgatttttctccccctgag
aatattaaccattttgcagtctgcaataaccagctttgtatgagccttgggaaagacacc
ctgctgagaattgatcttggaaagcctgatcaaccaaatcaggttgaacttggacgcaag
gatgatgcaaaagtacacaagctattcctggatcctacaggttcccatctgctgatcagc
ctaaatacaaacgagtgcctgtacctgaacagaaacactcagaaggtgcggagcctgtcg
cgatggaagggtcatctcattgagagcattggctggaacaagctcctgggtacagagacc
aacacatggcccatcctggtgggcaccagccagggacagatctatgaggcagagatatcg
gcatcagaaggaagcctattcaataccaacccagaccagtattttagactggtctacact
ttagatgaagatggcaaatcggcccctgtttgctgtttggagattgagcgggggattgaa
tcaaagttcttcatcatagcgaccacgcggaagcgtctgttccagtttgtcggaaaagtg
ccagaaggtgcagagcagcagggctttagttccattttcagccaaaatgcggaccatttc
cccagctttcaggagtttccagccaatcttggcttcagcgaaatagcgttttacacccct
aagctgcgtacctcgccgcgatcatttgcctggatgatgggtaatggagttttatatgga
acgctagactatacccgtcctgattctctgctaagtgatgttcaggtttgggagtatcct
ccggatatcgatttcaatttcaacaagcccatttccattgtcctgacgcagttccatttt
ctgctcttgttgcctgatcgggtgaaagctgtatgcatcttaaatgggcaggtggtttac
gaagatgtatttccagacaagtttgggcccttgaaaaatatgagcaaagactcggcttgc
ggattagtgtggatttacacagagaaagctgttttccgctaccacattcagagagaggcg
cgagatgtgtggcaaatgtacatgagcatgagcaagtttgacttggccaaagagtattgc
aaagacaggcctgagtgccttgacatcgtattggccaaagaagctgagcactgcttccag
aataagaaatatctggagagtgccaagtgttatgctctgacgcaaaactattttgaagag
attgccttaaagttcattgaagccaagcaggaagatgctctgaaagaattcctgatgaag
aaactcaacaacctgaagcccagcgagaagacacagattacccttctggtcacctggctt
acggaactctgcctcaacaggttgggcaccttagaaggggatgagtcgaaacgcagcctt
ttcttggagagcagagaacagttccgcaagttcctcagcagctccaaaatcaaagaatgt
ctgtacaacaacagaacgaccatttacgaccttttggccagccacggaaatgtggaagac
atggttttcttctctgtcattatgcaggactatgagcgtgtgatctcccactattgccag
catgatgactacgaagcagccctggaggtgttgtctaaacaccgcgatgagaagctgttc
tacaagttctcaccagtcctcatgcaacacatccccaagaaggtggtagatgcttggatc
cagatggggaagaaactagactctaagaatctcatccctgctctggtaaactacagccag
attggcagtacagagcagatcaatgagaccgtacgctacatggagttttgtgtatatgag
ttggctgtaacggaagaggcaatccacaactacctattgtctctctatgccaaatacaag
ccagagtctttgcttttgtacttggagcagactggaacacactcttcagacattcactat
gacctcaagtacgccttgcgtctgtgtgctgaacatgggcatcataaggcctgcgttcac
gtctataagataatggaactgtatgaggaggcagtggatctggcattgcaggtagatgtg
gacctggccaaatcctgtgcaaacctgccggaggatgacgaggaattgcggaagaagctg
tggctgaaaatcgcctgccacgtggtgcaggaggagaaggacgtgaagaaagccatgaac
tgcctctccagctgcaacctgctcaagattgaagacatcctgcccttcttcccagatttc
gtcaccattgaccacttcaaggaggccatctgcaactcgctggaggagtacaacaaacac
atcgaggagctcaagcaggagatggaagaagccaccgagagtgccaagcggattcgagag
gacatccaggagatgaggaataagtatggtgtggtggagtctcaggagaaatgtgctgcc
tgtgacttccccctgctcaaccgcccattttacctattcctgtgtagccacatgttccac
tatgactgcctccttcaagaggtcagcccccacctgtctgcttacaagcagaccaagctg
gaggaactccaaaagaagctgttgaccaccagccagcccaccaagtccagacatcagctg
aaagaggaggacacggcaagcctgggaaaaggccagctgagccgacagcagatcaagtca
cacattgacgacatcattgccgcagagtgcgtgtactgtggggagctgatgatcaagtct
attgataagccttttattgacccacagaagtatgaggatgggaaatcaagctggctataa
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