Polyodon spathula (Mississippi paddlefish): 121324403
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Entry
121324403 CDS
T07273
Name
(RefSeq) poly(A) polymerase type 3-like isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121324403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121324403
Enzymes [BR:
pspa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
121324403
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
121324403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
DUF4269
Motif
Other DBs
NCBI-GeneID:
121324403
NCBI-ProteinID:
XP_041122167
LinkDB
All DBs
Position
12:6352870..6368285
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AA seq
740 aa
AA seq
DB search
MPFPVVNQVLQAAQQPSKHYGITSPISLTQPKEADLILTQKLTEALKPYGVFEEELELQR
RILVLGKLNSVVKEWIRDMSETKHLPSSIIENIGGKIFTFGSYRLGVHTKGADIDALCVA
PRHVDRSDFFTSFYEKLKEQEEVKDLRAVEEAFVPVIKLSFDGIEIDLLFARLALQTIPG
DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIENFRLTLRAIKLWAKRHNIYSNI
LGFLGGVSWAMLVARTCQLYPNAVASTLVHKFFLVFSKWEWPNPVLLKQPEDCNLHLPVW
DPRVTPSDRYHLMPIITPAYPQQNSTFNVSVSTRAVMIEEFKQGLAITDEILQNKAEWSK
LFEAPNFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRILVGNLEKNEFITLAHVNPQS
FPGPKERNDKEEFSTMWVIGIVFKKMESSENLNVDLTYDIQSFTDTVYRQAINSKMFEPD
MKITAMHVKRKQLHQLLPNLVIQKRRKHSTEGIKLMNENSFDLSLDSDNSMSVPSPTAAL
KSCSQNRSISPQGRLSPTSVTNTQSEAQAKPEAGGNLVIPGGILGENILKPPAAPLAPKP
SLTRVSSTQVINQTPQSAGTPGTKPGIKRAGSPHPEETPKRLKADEETSENSLSADICAV
LADTKMSTEIEVGEVVSSTNDGEGDIETKDNVKELDSEERLNPPIPAAQRLSSTDLSDVP
TLPPNPIPVVKNSIKLRLSR
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgcctttccctgttgtaaatcaagtactgcaagcagcacagcagccctcaaaacattat
ggtatcacttctccaattagtcttacccagcccaaggaggctgatttgattctgactcag
aagctcactgaggcactgaaaccttatggggtttttgaagaagagttggaactgcagcgc
agaattttagttttgggaaaactaaacagtgtggttaaagaatggatcagagacatgagt
gaaacaaagcatttgccttcctctattattgagaacattggaggaaaaattttcaccttt
ggttcctatcggttaggagttcacacaaaaggtgctgatattgatgctctctgtgtggcc
ccacgtcatgtggacaggtcggacttcttcacatcgttttatgaaaagctcaaagaacaa
gaggaagtcaaggatttaagagctgttgaggaggcttttgtaccagtaataaaactgtca
tttgatggcatagagattgatcttctatttgcccgattagccctacaaactattcctgga
gacttggaccttcgagatgacagtttacttaaaaatttagacatcaggtgcataagaagt
cttaatggttgccgagttactgatgagattttgcatttggtaccaaacattgaaaacttc
agacttaccctcagggcaataaaattatgggcaaagcgtcataatatttattctaatata
cttggcttccttggtggtgtgtcatgggctatgttagttgccagaacatgccaactttat
ccaaatgctgtagcatccacacttgttcacaaattcttcctggttttttcaaagtgggaa
tggccgaatccagttcttctgaagcagcctgaggactgcaacctccatcttccagtgtgg
gaccccagggtgactccaagtgacagataccacttgatgccgattattacaccagcatat
ccacagcaaaactcaacctttaatgtctctgtgtctacacgtgcagtcatgattgaagag
tttaaacagggtcttgccatcacagatgaaatattgcagaataaggcagagtggtccaaa
ctttttgaagcaccaaacttctttcagaagtacaagcattatattgtgttgctagcaagt
gcacctacagaaaagcagcacctggaatgggttggtctggtagagtcaaaaatccgtatc
ctggttggaaatttggagaagaatgagtttatcacgttagcccatgtaaacccccagtca
ttcccaggtccaaaagaaagaaatgacaaggaagaattcagcacaatgtgggttataggg
attgtatttaagaaaatggagagcagtgaaaacctcaatgttgatctcacatatgacata
cagtcattcactgatacagtttacaggcaagcaataaacagtaaaatgtttgagcctgat
atgaaaattacagcaatgcatgtcaagagaaaacaattacaccagcttctgccaaacctt
gttatacagaagaggagaaagcactcaactgaaggcatcaaactgatgaatgagaacagt
tttgatctgtcattggacagtgacaacagtatgtcagtaccttctccaactgctgctttg
aaaagctgctctcaaaaccgttccatcagtccacaaggcagactaagcccaacatcagta
accaacactcagtctgaagctcaggctaaacctgaagctggaggaaacttggttatcccg
gggggtatattgggtgaaaacattctcaagcctccagcagctcccctagccccaaagccc
tccttgacccgtgtttcatctacacaagtgattaaccagaccccacagtctgcaggaacc
cctggcacaaaacctggaataaagagggcagggtctcctcacccagaggagaccccaaaa
agattgaaagcagatgaggaaacatcagaaaacagtttgtcagcagacatttgtgcagtt
ctggcagatactaagatgtctacagaaattgaggttggagaagttgtcagttctacaaat
gatggggaaggtgacatagaaactaaagacaatgttaaggagctggattcagaagaaagg
ttaaatccaccaattcctgcagcacagagactgtccagtacagacctgtcagacgttccc
actctccctcccaaccccattccagttgtgaagaattcaataaagttaagactgagtagg
tag
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