Polyodon spathula (Mississippi paddlefish): 121324422
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Entry
121324422 CDS
T07273
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04140
Autophagy - animal
pspa04148
Efferocytosis
pspa05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121324422
04148 Efferocytosis
121324422
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121324422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121324422
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
121324422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
Beta-prop_RIG_2nd
Lgl_C
Motif
Other DBs
NCBI-GeneID:
121324422
NCBI-ProteinID:
XP_041122208
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All DBs
Position
12:18318771..18352666
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AA seq
876 aa
AA seq
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MHDAFESVPILEKLPLQIDCMAAWEEWLLVGTKPGHLLLYRIKKDPSSNRFEVTLEKSNK
NFSKKIQQLYVVSQFKILVSLLENNIHVHDLLTFQQITVISKARGATLFACDLQHSSPGE
AKLRMCVAVKKKLQLYYWKDREFHELQGDFAAPDVPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFISSAGPNIVYVASNHFVWRLVPVSI
ATQIRQLLQDKQFELALQLAKMKDDSDGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFSK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPSLSGVELEKAHLALIDYLTQKRSHLVKKL
NDADPSPTSPLLEGIPTIKSRKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEES
EYVLKKAHKYSELIILYDKKGLHEKGLQVLLDQSTKANSPLKGHERTVQYLQRLGTENLG
IIFEFAPWVLKICPEDGLKIFTEDLTEVETLPRKEVLSFLKEGFKELAIPYLEHIILVWD
EVGPEFHNCLIQLYLERVQVLMKEYLNSLPEGASPVAAGNEEGELGKFRNKLLNFLEISN
NYEPDRLISDFPFDGLLEERAVLLGRMGKHEQALFIYVHILENIRMAEEYCHRHYDRLTD
GNKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLQAALQVLELHHSKLNTTKAIDLLP
ANTQIQEIRVFLESVLEENVKKKRFNQVLKSLLQAEFLRVQEERIFHQQVKCIITEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRSACPTEL
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgttcgagtcggtgccgatcctggagaagctgccactgcagatcgactgc
atggcggcctgggaggaatggcttcttgtcgggaccaaaccaggacatctcctcctctat
agaattaagaaggatccaagcagtaacaggtttgaagtgacactggaaaaatccaacaaa
aatttctccaagaaaattcagcagctgtacgtggtgtcccagtttaaaatccttgtcagt
ctgctggaaaacaatatccatgtccacgacctgctgactttccagcagatcactgtcatc
tccaaggctagaggggccactctgtttgcatgtgacctccagcactccagtccaggcgag
gccaagctgaggatgtgtgttgctgtgaagaagaagctgcagctctattactggaaggac
agagagttccatgaactccagggggatttcgcagccccggacgtccccaaatccatggcc
tggtgtgagaactccatctgtgtggggttcaaacgggactactacctcattcgaatggat
gggcggggctctatcaaggagctgttccccacagggaagcagctggagcccctggttgcc
ccactggctgatgggaaagtggcggttgggcaggatgacctgacagtagtgctcaatgaa
gaaggagtctgcactcagaaatgtgccctgaactggactgatatccccattgcaatggag
caccagcccccctatataatcgcagtgctgcctcgctacgttgagatccgcacctttgag
cctcggttactggtgcagagtgtggagctgcagagacctcgcttcatctcctccgcgggc
cccaacattgtttacgtcgccagtaaccactttgtgtggcggctggttcctgtctctata
gcgacacagatccggcagcttcttcaggataagcagtttgaattggctctccagctggca
aagatgaaggacgattccgatggagacaagaggcagcaaatccaccacatccagaacttg
tatgccttcaacctgttctgtcagaaacgctttgacgactccatgcaggtcttctccaag
ctgggcacagatcccacccacgtgattgggctgtacccagacctgctgccctctgactac
aggaagcagctgcactaccctaaccccctgcccagcctgtcgggtgtagaactggagaag
gcacacctggcactcatcgactacctgacccagaaacggagtcacctggtgaagaagctg
aacgatgcggacccctcgcccacctctcctctcctggagggaattcccaccatcaagtcc
cgcaagaaactcctgcagatcattgacaccacactgctcaagtgctacctgcataccaat
gtagccctggtagcgccactgctgcgcctggagaacaaccactgccacatcgaggagagc
gagtacgtgctgaagaaggctcacaagtacagcgagctcatcatcctgtatgataagaag
gggctgcatgagaaaggcttacaggttctgctggatcagtccacgaaggctaactccccc
ctcaagggccacgagaggacggtgcagtacctccagagactggggacggagaacttggga
atcattttcgagttcgctccctgggtgctgaaaatatgtcctgaagatggactgaagatc
ttcactgaagacctcacggaggtggagactctgccgagaaaggaggtcctgtccttcctc
aaggaggggttcaaggagctggccatcccatacctggagcacattattctggtgtgggac
gaggtgggacccgagttccataactgcctgatccagctgtatctggagcgagtccaggtc
ctgatgaaagagtacctgaactcgcttcctgagggtgcgagcccagtggctgccgggaat
gaggagggggagcttgggaaattccgaaacaaactcctgaatttcctggagatttctaat
aattacgaaccagaccgtcttatcagcgacttccccttcgacgggctgctggaggagcgt
gccgtgctgctgggccggatggggaaacacgagcaggccctcttcatctacgtgcacatc
ctggagaacatcagaatggctgaggagtactgccacagacattatgacaggctcactgat
ggaaataaagatgtgtatctgtctctgctgcggatgtacctttcccccccagacgttcac
tgcctggggccaatcaaaatggagctgtctgaaccacaggccaatctacaggcagcactg
caggtcctggagcttcatcacagcaaactgaacaccaccaaggcgattgacctccttccc
gctaacacccaaatccaggagatccgagtttttctcgaaagcgttctggaggagaacgtc
aagaagaagagattcaatcaagttctcaagagcctgctgcaagcggagtttctcagggtt
caggaggagaggattttccaccagcaggtgaagtgcatcataacagaagagaagacatgt
cgcgtgtgcaagaagaagattggaaacagtgcatttgccaggtacccgaatggtgtggtg
gttcattatttctgctgcaaagaccgcagcgcctgcccaacagagctgtga
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