Polyodon spathula (Mississippi paddlefish): 121324462
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Entry
121324462 CDS
T07273
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121324462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121324462
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121324462
Spliceosome [BR:
pspa03041
]
Complex A
U2 snRNP components
U2 related factors
121324462
Complex B
121324462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
121324462
NCBI-ProteinID:
XP_041122313
LinkDB
All DBs
Position
12:complement(38347996..38363652)
Genome browser
AA seq
1062 aa
AA seq
DB search
MKKKQLKTPALRHYRKRSASRGRSGSRSPEKRVKRDERVRSRSRERERRRERTHSRERRR
SRSRERKRVRRSRSRERRRSRSRDRRGRRSRSTSPSKSRKTDDGSKSKEKNDSTEPSAEK
KKIKEEKEEEKDEAVSEVRTKDATTERQPDENFDQNKLEEEMRKRKERVEKWREEQRKKA
MENIGELKRELEEMKQGKKWSLEDDEDDDEDGVAVAQEAEAEKEAEEEVEAEAESMEDVD
DEQDTLDAYMEEVKEEVKKFNMGSMKGANDKKSGTTVTKVLTVLTTKKASCDSEKKKGEL
MENDQDAMEYSSEEEEVDLQTALTGYQSKQRKLLEPVDHQKIEYEPYRKNFYVEVPELTR
MTPEEVHIYRLELEGISVKGKGCPKPIKTWVQCGISMKILSALKKQNYEKPTPIQAQAIP
AIMCGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEEAEGPIAVIMTPTRELALQITKE
CKKCSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVT
YVVVDEADRMFDMGFEPQVMRIVDNIRPDRQTVMFSATFPRAMEALARRILSKPVEVQVG
GRSIVCSDVEQHVIVLEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKELMKASY
PCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKHLILVINYNCPNHYEDYV
HRAGRTGRAGNKGFVYTFITEDQARYTVDIIKALELSGAAVPPELEQLWNNFKDQQKAEG
KSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIDEQIESMFNSK
KRVKDMAAPGGGGGGGANAAAGGGVGPSMLVPSAGNAEKLEIAKKLALKINAQKNLGSEA
LDVMQQATNAVLRGGTIQPQSVSAKTIAEQLAEKINAKLNYIPVEKQEEEKQESVQNETL
KRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLA
IESANELAVQKAKAEISRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaagcagttgaaaaccccagcattgagacactaccgaaagcgctctgcctcg
aggggccggtccgggagccgctctccagagaagcgtgtgaagcgtgatgagcgggtccgc
tccaggagcagagagcgagagcgcaggagagaaaggactcacagcagagagaggaggaga
tcccggtccagggagaggaagcgagtcagacgttctcgcagccgggagaggaggcgctcc
cgcagtcgggaccgcagaggtcggaggtcacgctccaccagccccagcaagagcaggaag
actgatgacggatcaaaatccaaggagaaaaatgacagcacagagccctctgctgaaaaa
aagaaaataaaagaggaaaaagaggaagaaaaggatgaagctgtgtctgaagttaggaca
aaggatgcgacgacagaacggcagcctgatgagaactttgaccagaataagctggaggag
gagatgaggaaaaggaaagagcgagtggagaaatggagagaagagcagcggaagaaagca
atggaaaacatcggggagctgaagagggagctggaggagatgaagcagggaaagaagtgg
agccttgaggatgacgaggatgatgacgaggatggggtggcagtggctcaagaggcagaa
gcagagaaagaggcagaggaagaagtagaggcagaggcagaaagcatggaggatgtggat
gatgagcaagacacgctagacgcctacatggaggaggtgaaggaggaggtgaagaaattc
aacatgggcagcatgaaaggtgcaaatgacaagaagagtggtacaacagtaaccaaagtg
ttgactgtattaacgaccaaaaaagcatcttgtgactccgagaagaagaaaggggagctg
atggaaaacgaccaggatgcaatggagtactcctcagaagaggaagaggttgatcttcag
actgcactcactgggtatcagtcgaaacagaggaagctgctggaacctgtggaccatcag
aagatcgagtatgagccataccgcaagaacttctatgtcgaggttcctgagctgactaga
atgactccagaagaagtgcatatctaccggttggaattggaagggatttcagtgaagggt
aaaggctgccccaaaccaatcaagacctgggtgcaatgtggcatctctatgaagatttta
agtgctcttaaaaaacaaaactatgaaaaacctacaccgatccaagcccaggctattcct
gccatcatgtgtgggagggatctgattgggattgctaaaactggcagtggcaagactatc
gcctttctgctgcccatgttccggcacatcatggaccagagacctttggaggaagctgag
ggtccgattgcggtcatcatgaccccgactcgagaattggcccttcagataactaaagaa
tgcaagaagtgctcaaagcctctgggtctccgggtggtctgtgtgtacggaggcacagga
atcagtgaacagattgcagaactaaagagaggagctgagatcattgtatgcacgcccggg
cgcatgatagacatgttgggagccaataatggtcgagtcacaaacctgcgtagagtcacc
tacgttgtggtagatgaagctgacaggatgtttgacatgggttttgaaccgcaggtcatg
cgcattgttgacaacatccgtccagaccggcagacagtgatgttctcagccacattcccc
agagccatggaggccctcgctcggaggatattatccaaacctgtggaggtgcaggtggga
ggcagaagcattgtgtgctcggatgtggagcagcatgtgattgtccttgaggaagagaac
aagttcctgaagctgctggagctgctgggtcactaccaggagaagggctctgttataata
tttgtagacaaacaggagcacgcggatgggctgttgaaggagctgatgaaggcctcgtac
ccttgcatgtcccttcacggaggcatcgaccagtatgaccgagatagcattataaatgac
tttaagaatggagcctgtcgactgcttgtggcaacctcggtcgctgccagagggctggat
gtgaagcacctgatcttggtgatcaactacaactgccccaatcactatgaggattatgtg
caccgagccggccgcactgggagagcagggaataaagggtttgtctacacctttattacg
gaggaccaagctcgctacactgtggatattataaaggctctggagctgtcaggagccgct
gttcctccagaactggagcagctatggaacaacttcaaggatcaacagaaagctgaggga
aaaagcatcaagagcagcagcggcttctctgggaaaggcttcaagtttgatgagacagag
cacgctctggccaacgagaggaagaagctgcagaaagctgcgctggggctgcaggactct
gatgacgaggatggtgctttagatattgatgagcagatcgagagtatgttcaactctaag
aagagagtgaaggacatggccgcaccagggggtggtggaggagggggagccaacgctgct
gctggaggcggggtggggcccagcatgctggtgccctctgctggcaacgctgagaaactg
gagatcgccaagaaactggcactgaagatcaacgcacagaagaatctgggttcggaagca
ctggatgtgatgcagcaagcaacaaacgcagttttgcgtggaggcaccattcagccacag
tctgtctctgcaaagaccatcgcggagcagctggctgagaagatcaacgccaagttgaac
tacatccctgtggagaagcaggaggaggagaaacaggaaagcgtgcagaacgagacactg
aagagatacgaggaggagctggagatcaacgacttcccccagactgcccgctggaaggtc
acctccaaagaggcattgcagaggatcggcgagtattcggaggctgctattaccatccga
gggacttacttcccaccaggcaaggagccgaaggaaggagagcgcaagatctatctggcc
atcgaaagtgcgaacgagctggccgtgcagaaagctaaagcagagatctccaggcttatt
aaagaagagctcatcagactgcaaaactcttaccagccgaccagcaagggaagatacaag
gttttgtag
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