Polyodon spathula (Mississippi paddlefish): 121324468
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Entry
121324468 CDS
T07273
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121324468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121324468
03036 Chromosome and associated proteins [BR:
pspa03036
]
121324468
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121324468
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121324468
PBAF complex
121324468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
GCN5L1
Pcf11_helical
Sarcoglycan_2
Pepsin-I3
Motif
Other DBs
NCBI-GeneID:
121324468
NCBI-ProteinID:
XP_041122325
LinkDB
All DBs
Position
12:complement(44744822..44759381)
Genome browser
AA seq
471 aa
AA seq
DB search
MENVINETEAAFFFWHKAKALQSWMWCEPNDWNSLIASLQICQDVKKAILCPAPSPCPHH
TNAQHPRVCGIQPIQPSGVQQLQTGGQPRQQQPGNEFSGITIPKPPKPPDKPLMPYMRYS
RKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIEYNESMKTYHNSP
AYLAYINAKSRAEAALEEESRQRQSRIDKGEPYMSIQPAEDPDDYDDGFSMKHTAAARFQ
RNHRLISEILSESVVPDVRSVVTTARMQVLKRQVQSLMVHQRKLEAELLQIEDRHLDKKR
KFLETTDSFNNELKRLCGMKVEVDMEKIAAEITAAEEAARKRQEAAEQAERAAAAAAALE
EKQEAIAAETEAGKQEAAAPEEEEPEKKEEEPEAEPMETDEPQAEEASESQQNSEEGAST
TEDKESVPEGVDSVVEEGTSDSNTGSESNSAPPEEPPAESGPEETVSEKKE
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgttataaatgaaacggaagctgccttttttttttggcacaaagcgaaggcg
ctgcagtcttggatgtggtgtgaacccaatgactggaatagcctgatagcttccctccag
atctgccaagatgtcaaaaaggccatcctatgccccgcccccagcccctgcccccaccac
acaaatgcccagcaccccagggtttgtgggatacaacccatacagccatctggcgtacaa
caactacagactggggggcaacccaggcagcaacagccgggcaacgaattttcagggatt
acaattccaaagccaccaaaacctccggataagcccttgatgccctatatgagatatagc
agaaaggtttgggaccaagtaaaagcgtcgaatccagacctgaagctgtgggagataggg
aagattatcggtgggatgtggagagacctcaccgatgaagaaaagcaggaatacttaaat
gaatacgaggcagaaaagattgagtacaacgagtcgatgaaaacctaccacaactctcca
gcctacctggcctacatcaatgccaagagccgggcggaggcagccttggaggaggagagc
cggcagaggcagtctcgcattgataagggggagccctacatgagcatccagccagcagag
gaccctgatgactatgatgatgggttttctatgaagcacacggcggccgctcggttccag
cggaaccacaggctgatcagcgagatcctgagcgagagcgtggtgccggatgtccggtcc
gtggtgaccacagccaggatgcaggtcctcaagaggcaggtccagtccttgatggtgcat
cagaggaagttggaagcggagttgctccagattgaagaccgccacctggataagaaaaga
aaatttttggagacaacagactcattcaacaatgagctcaagaggctgtgtgggatgaag
gtcgaggtggacatggagaagatcgctgcggagatcacagccgcggaggaggcggctcgg
aagaggcaggaggctgcagagcaggcagagagggcagcggcagcggcagcagcactggag
gaaaagcaggaggcaatagcagcagagacagaggcaggcaaacaagaagcagcagcacct
gaggaggaggagccagagaagaaagaggaggagccagaagcggaacccatggagacagat
gagccccaggcagaggaggcctcggagagccagcagaacagcgaggaaggggcctccact
acagaagacaaagagagcgtgccggagggagtggacagtgtggttgaagagggcacaagc
gacagcaacactggctctgaaagcaacagcgccccccctgaagaacctcccgcagagtct
ggacccgaggagactgtttccgagaagaaagaatag
DBGET
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