Polyodon spathula (Mississippi paddlefish): 121324502
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Entry
121324502 CDS
T07273
Symbol
dcaf5
Name
(RefSeq) DDB1- and CUL4-associated factor 5
KO
K11800
DDB1- and CUL4-associated factor 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121324502 (dcaf5)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121324502 (dcaf5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_EML_2
EIF3I
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
121324502
NCBI-ProteinID:
XP_041122409
LinkDB
All DBs
Position
12:20222593..20279746
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AA seq
853 aa
AA seq
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MREVKGCGMRSVVGFLSQRKINGHPLMKEEFQRRRLAGCSSLYRKDMLGHFGCVNAIEFS
NNGGEWLVSGGDDRRVLLWHMEKAIHSRAKPLKLKGEHLSNIFCLAFDSTNKRVFSGGND
EQVILHDVERGETLNVFLHDDSVYGLSVSPVNDNVFASSSDDGRVLIWDTREPPNGEPFC
LANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPRSSLLRYGGNLSLQSAMSVRFN
STGTQLLALRRRLPPVLYELHSRLPSFQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDF
NLYMWRIPKDPEAGGPGRVVNGAFMVLKGHRSIVNQVRFNPHNYTICSSGVEKVIKMWSP
YQQPGSMGDLEGQVDDDSRSLYTHEEYISLVLNSGSGLSHDYYSQSIQEDPRMMAFFDSL
VRREIEGWSSDSDSDLSEGTILQLHARGRGGGETALAATPATVLEHQSDSERSSSPSLAT
PPVPEGADSPCPPPTDMLIRQHQQTQRRRRHTYQDVSLLDMVDNSSDSSGDWSDPIPRPR
SPSPRVNSSSGSSSSLAASSSSSSSTSSEEEEEEEEEEEEQRRASMRQRNASRRRPVKFC
HQGEERPESTTTRALCLGADSCIYPEITVEEPSTSEEEEEAFPKAQDSRRQNKGRPGFKP
DTPPVKSTETSAGEKEGGVPDLGEVDENEEEEEEEEKRENHSEAPPGHHFHEHPFLGRAQ
PDGQPLNGNGVPREQETGEGSLENSSDPLVIQPHPCPPSDNQEEEELSPSCSDSSHGSHA
NGQHHREQESRALGSQPCLSDSVPGCEQKRQRVLETDRDFHSGNQAETHSSCRRARLRTP
TQKRNSEHDEARA
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgagggaggtgaagggctgcggcatgcggtctgtggtgggctttttgtctcagagaaaa
ataaacgggcaccccctgatgaaagaggaatttcagaggcgaaggttggcaggctgcagt
agcctgtacaggaaagatatgctgggacattttggatgtgtcaatgcaatagagttttcc
aacaatggaggggaatggctggtgtccggaggcgatgatcggcgggtgctgctctggcac
atggagaaagccatccattcccgggctaagccactgaagctgaagggagaacacctctcc
aacatcttttgcctggcattcgacagcaccaacaagcgtgtcttctctggagggaatgat
gagcaggtcattcttcatgatgttgagaggggtgagaccttgaacgtgttcctccacgat
gactccgtctatggcctgtctgtcagtcctgtcaatgacaatgtgttcgccagctcctcg
gacgatgggagggtcctgatctgggatacccgcgaacccccaaatggagagcccttctgt
ttggccaactacccctctgcgtttcacagcgtgatgtttaaccctgtggagcccaggctg
ctcgccactgccaactcgaaggagggagtggggctgtgggacatccgcaagccacggagc
tccctgttgcggtacggagggaacctgtccctgcagagcgctatgagtgttcgcttcaac
agcacgggcacccagctgctggccttgcggcgccgccttcccccggtcctctatgagcta
cactcccgcctccccagcttccagttcgacaaccagggctacttcaactcctgcaccatg
aagagctgctgcttcgctggggaccgggaccagtacatcctgtcgggatcggatgacttt
aacctgtacatgtggaggattcctaaggaccctgaggctggcggccctggcagggtggtg
aacggagccttcatggtgctgaagggtcatcgctccatcgttaaccaggtgcgcttcaac
cctcacaactacacgatctgctcttctggggtggagaaggtgatcaagatgtggagcccg
taccagcagcctggcagcatgggggacctggaagggcaagtagatgacgactcccgcagc
ctgtacacccacgaggagtatatcagcctggtgctgaacagcgggagcgggttgtcccac
gactactacagccagtctatccaggaggacccacgcatgatggcattcttcgactcgttg
gtgcgccgagagatcgagggctggagctcggactccgacagcgacctgagcgagggaacc
atcctgcagcttcatgccaggggccggggagggggagagacagcactggccgccacccct
gctactgtcctggagcaccagagtgactctgagcgctcctcctccccttccctggctact
cctccggtccctgagggagcagattccccctgccccccaccgacggacatgctcatccgg
cagcatcagcagacacagcggcggagacggcacacctaccaagacgtcagcctgctagac
atggtcgacaactcctccgactccagcggggactggtctgaccccatcccccggccacgc
tctcccagccccagggtcaactcatcttcaggcagctccagctcgctcgccgccagcagc
agcagcagcagcagcaccagtagtgaggaggaggaggaggaggaggaggaggaggaggag
cagaggcgagcgtccatgcggcaacgcaatgcctccaggaggcgacctgtgaagttctgc
catcaaggagaggagagaccggagtcgaccactaccagggccctttgcctgggagcggac
tcctgcatctaccctgagatcacagtggaggagccttccacctcggaagaggaggaggaa
gccttccccaaagcacaggattctagaagacagaacaaaggcaggccaggatttaagcca
gacactcccccagtaaaaagtacagaaacttctgcaggtgaaaaggaagggggagtccca
gacctgggagaggtggatgagaatgaggaggaggaagaggaagaggagaagagggagaat
cactctgaagctccccctggacaccactttcatgagcatcctttcctggggagagcccaa
ccagatggacagccgctgaacgggaatggggtgccgagagagcaggagacaggagaggga
agtttagagaactctagtgaccccttggtcattcagccccatccctgccctccatcagac
aatcaagaggaggaggagctaagcccttcatgttcagatagcagccatggttcacatgca
aatgggcagcaccacagagaacaggagagcagggcgttggggtcgcagccctgcctctct
gacagtgtgcctggatgtgaacaaaaacgtcagcgtgtcctcgaaacagacagggatttc
cacagcggcaaccaggctgaaacgcactcgagctgcagaagagccagactgagaactccc
actcagaaaagaaattcagaacatgatgaagcccgtgcttga
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