Polyodon spathula (Mississippi paddlefish): 121324509
Help
Entry
121324509 CDS
T07273
Name
(RefSeq) synaptopodin-like isoform X1
KO
K21112
synaptopodin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121324509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
121324509
NCBI-ProteinID:
XP_041122417
LinkDB
All DBs
Position
12:35464879..35489485
Genome browser
AA seq
1059 aa
AA seq
DB search
MMWKLDSLEHQTRAEGSSEPGLALSDNIQPFLNTEVSPSGINTEMKKTGQVFAQPQSRSW
ASMDQNQQGDVKEEKRTQQPVRRGMSWAGPEPGAEHWNSKSLSQRRERPVCPISDSELPL
EGELGGAGSAPDWERSGEEWKVVKVKPVMITSATPQARKTTPVPGGNTTEVKGFTSHWKA
TEPPSLPHKSELQTLPSHHSSDLSRSASFSEKELKEARDRSQIIASQLTTPPNANSRGVQ
LFNRRKHRVNAFTLVSFGKGARQGPLDKDTKTCEGTFTDKRNPDPSSSCTSKSLKYRSVY
PKHRDTRDKIMEEQVESIHEADTDDSSLEIPEVQVRKRLAEDLRSETVAVALTQELKEEP
PNEIFNYARKDRPTHGLLEAEKNGPSYLVITGEEQNRVPSAESGREISVSLSKQPPTIVN
RTARPFGSPALVSVQETRSPVSPPPAFSTPPQPSLPIPQTPSFPNHPPVSHVISPFSSPY
VPQYVASADQRPAYEPWYSNEERQQVPMQKTGILEEGKTRRASRKSMFTFQEKPKVNPNP
ELLSLVQGVDEKKKHQQPGEQTHDEELLALGAEASNFLTKANSEDSKAPEWSSCLKSSGS
RVRSEPKPAQGLTNVAGKGAELFAKRQSRMEKYVVESPPVLGGALRSPSPTMSLPPSWTF
ASNVPGRVRAMADSANITANPSRSSKQQPSGSFADQESPVIENGSSKKEMDIAKHQPYQL
NSSLFIFSPSKDPMRSLPRAAPPPKPMVLDGANTRQSSLPFSPPPVSPLFDSPTPFRATK
CLSSQVPPSPVNGLGTQFRPSLGTPLEVVEAPPASPASSLQPGRVPSPRPGIQAPRPTFC
AKKAGIEPQARKESLSVASTWTPRQSRPPSTPDRGTGVSKAQPAAEVPVSSPRARYPSSG
SSPLSPPWDQRSQSSIGQDIKASRRMLAKNIINAARRKNTTSPRGLDEQEASMSPTSSSF
LHHGQQPSSPLSFQARTLVNHSPTFRSPPETPTRMIRSPVHLYATRSLTDSDASGDSEDS
GLRSPSSGLKSPGARSYNTCPRGWNGSLRLKRDGISAEL
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgatgtggaagcttgactctttggagcatcagaccagagcagaggggtcttcagaacct
ggacttgcattgagtgacaacatccaaccatttttgaatacagaggtcagcccttctggg
attaatacagagatgaaaaaaacaggccaagtctttgctcagccccagtcaaggagttgg
gcttcgatggaccaaaatcaacagggagatgtgaaggaggaaaaaagaacacagcagcca
gtgaggcgaggaatgagttgggcaggccccgagccaggagctgagcactggaactcaaag
agcctcagccaaaggagggagaggcctgtctgccctatatcagactcggagctacctctg
gaaggggaattgggaggagcaggcagtgccccagactgggagaggtcaggagaggagtgg
aaggtggtgaaagtgaagcccgtgatgatcaccagcgccacgccacaggccagaaaaaca
actccagtgccaggtggaaacactacagaggtcaaaggcttcacatcccattggaaagcc
actgagccaccaagcctaccccacaaatctgagctgcaaaccctgcccagccaccactcc
tcagatctttccagaagtgccagcttctcagaaaaagagctgaaggaagcaagagacaga
agtcaaataatagcttcccagctgaccaccccacccaacgccaattccagaggggtgcaa
ctcttcaacagacgcaagcatcgggtgaacgccttcaccctggtcagctttggcaaagga
gccagacaggggcctcttgacaaggacaccaaaacatgtgagggaacgttcactgataaa
cggaacccagacccaagcagcagctgcacatcaaagtccctgaagtacaggtcagtgtat
ccaaaacacagggataccagagacaagatcatggaggagcaagttgagagcatccatgaa
gcagacacagacgacagtagtttagaaattcctgaagtgcaggttaggaaacggctggct
gaagacctgagatctgagactgttgcagtggctttgacccaggagctgaaagaagagcct
ccaaatgagatttttaactatgctaggaaggatcggccaacccacggtcttctggaagct
gagaaaaatgggccaagctacttggtcataactggcgaagaacaaaatagagttccaagt
gcagagagcggtagagaaatctcagtgtccctgagtaaacaaccgcccactatagtcaac
agaacagcaaggccgttcgggtcccctgccttggtaagcgtgcaagagacaagaagtcct
gtgtctccaccaccagccttttcaactcccccacagccatcccttccaattcctcagaca
ccatcatttccaaatcatccaccagtgtcccacgtcatctctccattttcttctccttat
gtgccacagtatgtagcaagcgcagaccaaagaccagcctatgagccatggtatagcaat
gaagagagacagcaggtgcccatgcagaagactggcatactagaagaaggtaagacacgg
agggcatccaggaagtccatgttcacatttcaagagaagcccaaggtcaatccaaaccct
gagttgctgtccctggtgcaaggtgtagacgagaagaaaaagcaccaacagccaggagaa
cagacacacgacgaggaacttctagccctaggggccgaagcgtcaaacttcctgactaaa
gcaaattcagaggactccaaggcacctgaatggtcatcatgcttgaagagctctggatca
agggttaggtctgaacccaagccagctcaagggctgaccaatgttgcagggaaaggggca
gagctgtttgccaaacggcagtccagaatggaaaagtatgtggtagaatccccaccagtt
ctaggaggcgctctgaggtccccctccccaaccatgtccctacctccttcttggacattt
gcatctaatgtgccagggcgggtgagagctatggctgactctgctaacatcactgctaat
ccttccaggagctccaaacagcaaccatctggctcttttgcagatcaagaaagcccagtc
attgaaaacggaagttccaagaaagagatggacattgcaaagcaccagccttatcagctg
aactcctctctcttcatcttctccccgagcaaagaccccatgaggtccttacccagggct
gcaccccctcccaaacccatggtcctagacggagctaacaccaggcagagctccctaccc
ttctcccctcctcctgtatccccactgttcgatagtccaacacccttcagagccaccaag
tgcctttcctctcaggtgccaccaagcccagtcaatggactaggaacacagttcagaccg
agccttggaactcctctggaggtggttgaggctcctccagcctccccagcttcatctctg
cagccgggccgtgtcccctcaccacgtcctggcatccaggctccgagacccacattttgt
gccaagaaggcagggatcgaaccccaggcccggaaggagtccctctcagtcgctagtacc
tggacaccccgtcagtcaagacccccgagcaccccggacagaggtacaggtgtgtcgaag
gcacaaccagctgctgaagtccctgtgtcctccccacgggcccgctatccatcgtcaggc
tcgtctcctctctcccctccgtgggatcagcggagccagtcctccatcggccaggacatc
aaagccagtcggcgcatgctagccaagaacatcatcaacgctgccaggaggaagaacacc
acatcacccaggggattggacgagcaagaggcgtccatgtctcctacaagcagctccttc
ttacaccatggacagcagccctccagccccttgtcctttcaagccaggactttagtaaac
cattctccaacattccggagtccaccagagacccccactaggatgatcaggtcgcccgtg
catttgtatgccacccggtcactgacggattcagatgcctcaggagattctgaagactct
gggttaagatcccccagctctggcctgaagtccccaggtgcccggagctacaacacctgc
ccccgaggctggaacggaagcctgcggctaaagagggacggcatctctgcagaactgtga
DBGET
integrated database retrieval system
