Polyodon spathula (Mississippi paddlefish): 121324525
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Entry
121324525 CDS
T07273
Name
(RefSeq) eukaryotic peptide chain release factor subunit 1
KO
K03265
peptide chain release factor subunit 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121324525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121324525
03012 Translation factors [BR:
pspa03012
]
121324525
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121324525
Translation factors [BR:
pspa03012
]
Eukaryotic type
Release factors
121324525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_2
eRF1_3
eRF1_1
acVLRF1
baeRF_family10
Ribosomal_L7Ae
Motif
Other DBs
NCBI-GeneID:
121324525
NCBI-ProteinID:
XP_041122457
LinkDB
All DBs
Position
12:30249434..30259456
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AA seq
437 aa
AA seq
DB search
MADDPTAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFVSNDKVNVAGMVLAGSADFKTELSQSD
MFDPRLQAKVLKLVDISYGGENGFNQAIELSAEVLSNVKFIQEKKLIGRYFDEISQDTGK
YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLRCSGLEEDKVLFLTPEQEKDKSHFTDK
ETGQEHELIDSMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ
LIEYQGEDDEFFDLDDY
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgatccgacagcagccgacagaaacgtggagatttggaaaatcaagaaactg
atcaaaagcttggaagcggcccggggaaatggcacaagcatgatttccttaataatcccc
cctaaggaccagatctcacgggtggcaaagatgttggcagatgagtttggcactgcatcc
aacatcaaatctagagtcaacaggctgtctgttctgggagccatcacatctgtacaacag
agactcaaactttacaacaaagtgccaccaaacgggctcgttgtctattgtggaacaatc
gtaacagaggagggcaaggaaaagaaagttaacatagactttgagccgttcaaacccatc
aacacatcgctttatctgtgtgacaacaaatttcatacagaggctctgacagcgctgcta
tcagatgacagtaaattcggcttcatcgtgattgacgggagtggggctctgttcggcact
ctccaggggaacacgcgggaggtcctgcacaaattcacagtcgacttgcccaagaagcac
ggcaggggtggtcagtctgctttgcgattcgccaggttacgaatggagaagagacacaac
tacgtgcgaaaagtggcggagacagcagtgcagcttttcgtctccaacgacaaagtcaac
gtcgctgggatggtgctggccgggtctgcggacttcaagactgagctgagtcagtctgat
atgtttgacccgagattacaagccaaagtgctgaagctggtggacatctcgtatggaggg
gagaacggtttcaaccaggccatcgagctgtctgcagaggtgctctccaatgtgaagttc
attcaggaaaagaagctaatagggcggtactttgatgagatcagccaggacacagggaag
tactgctttggagtggaagacacactgaaggctctggagatgggggctgtggagatcctc
attgtgtatgagaacttggacatcatgcgatatgtcttgcgctgcagtggtttagaagag
gacaaggtgctgttcctcacaccagagcaggagaaggataagtcacactttacagacaag
gagactgggcaagagcatgagctgatcgacagcatgccgctcctggagtggttcgccaat
aactacaagaagtttggagccacactggaaatcgtgacggacaagtcgcaggagggctcc
cagttcgtcaaagggttcggtgggattggaggaatcctgcgatatcgagttgatttccag
ctaatagagtaccagggagaagatgatgaatttttcgatttggatgactactag
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