Polyodon spathula (Mississippi paddlefish): 121324535
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Entry
121324535 CDS
T07273
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121324535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121324535
Spliceosome [BR:
pspa03041
]
Complex B
Other components
Prp19-related factors
121324535
Complex C
121324535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
zf-CCCH_2
RRM_occluded
Nup35_RRM_2
zf-CCCH
zf-CCCH_4
RRM_YTH1
zf-CCCH_3
zf-CCCH_10
RRM_3
zf-CCCH_12
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
121324535
NCBI-ProteinID:
XP_041122475
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All DBs
Position
12:complement(27164313..27171305)
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AA seq
423 aa
AA seq
DB search
MATSLGANTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDTSLSIKDDMPKSDVNKEFYTQN
MEREIQNSDGTRAIGLLGKTPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKSISTLYVGGLG
DTVTETDLRNHFYQFGEIRTTTIVQRQQCAFIQFATRQAAELAAEKSFNKLIINGRRLTV
KWGRSQAARGKEKEKDGVTEAGMRLEPVPGLPGTLPPPPDAEEEAPANYFNLGPNTSPAV
MNIALPPPPGIAPPPPPGFGPPMFHSMGPPPPPPQFMRAPGPIHYPSQDPQRMGAHANLH
GNS
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccttgggagcgaacacttacaataggcaaaactgggaagacgcggacttc
cctattctttgccaaacatgcctaggagaaaatccctatatccgcatgacaaaagagaaa
tatggcaaggagtgcaagatctgtgccagaccctttacagtgtttcgctggtgcccaggg
gtgcggatgcgcttcaaaaaaacagaagtgtgtcagacatgcagcaaactgaagaatgtg
tgtcagacctgcctgttggatctggaatatggattgccaatccaggttcgtgacactagt
ctgtccatcaaagacgacatgccgaaatcggatgtcaataaagagttttacactcagaac
atggaaagagagattcagaactctgatgggacaagggcaattgggttactgggaaagaca
ccgagctccagtgacatgctgctgaaactggcaaggaccaccccttattacaaacgtaat
cgaccccacatctgctccttctgggtgaaaggagagtgtaagagaggagaagagtgtccc
tacaggcatgagaagccaacagacccagatgaccccctggcagaccagaatattaaagac
cgttattatgggattaatgaccctgtggcagacaagcttcttaaacgtgcctctaccatg
ccacgtctagacccgcccgaggacaaatctatctcaaccttgtatgtgggcggactggga
gacactgttacagagaccgatctcaggaatcacttttaccagtttggagagattcgtacc
acaacaatagtgcagaggcagcagtgtgcatttattcagtttgctacaagacaagcggct
gaacttgctgctgagaaatccttcaacaaattgattatcaatggccgcaggctcacagtc
aagtggggcaggtcccaggcagcgagaggaaaggagaaagaaaaggatggcgttacagag
gctggcatgagattggagccagtaccaggtctcccaggaaccctgccccctccccctgat
gcagaggaagaggctccagcaaattacttcaaccttggtccaaatacgtctccagcagtg
atgaacatcgccctgccacccccaccaggcattgcaccccctcctcctccaggttttgga
cctcccatgttccactcaatgggcccacccccacctccccctcagttcatgagagcccca
ggtcccatccactacccttcccaggatccccagcgaatgggcgcccatgccaacttacat
gggaattcctaa
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