Polyodon spathula (Mississippi paddlefish): 121324552
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Entry
121324552 CDS
T07273
Name
(RefSeq) collagen alpha-1(XXIII) chain-like isoform X1
KO
K24355
collagen type XXIII alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121324552
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121324552
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
121324552
NCBI-ProteinID:
XP_041122513
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All DBs
Position
12:24310569..24539331
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AA seq
584 aa
AA seq
DB search
MDSTEKLNQNKDSDVKKVVPKSEFFGALVSLPTCLCLMLSVSSVAFCFLLSFKTFQLENR
VKVLEKENAPVFAPAETSILTEGRTLLPVIRDTIESILQERLNEALPRLRTARDLQAQCS
CPPGPPGKRGKAGRQGDHGPPGTPGRDGYPGPLGMDGKPGPPGSKGDKGDQGDAGPRMVF
PRLDHGFLSGDQPNFQRRILKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGPPGELGED
GAPGQKGEKGIMGFQGERGIDGLSGTKGEMGAPGIPGFPGLKGEPGSEGPAGPRGLPGQK
GHQGATEIIDYDGRIHEALQAIQTISVMGPAGPPGPPGPKGDAGPKGELGLPGIAGVGGE
QGPKGEDGIPGLAGQRGEKGEMGLSGPAGIDGQKGEKGEPCPSSLEDHIVQMISQPGPPG
LPGPPGPQGPIGLTGAPGPEGESGLDGLNGEKGEPGERGPPGPTGLVGLPGTKGEKGKTG
EPGLDGFPGQRGEKGDQGVKGDKGERGTTGKRGLKGHKGEQGPPGLDQPCPVGTPGGRGG
QGEVGMPGLDAPCPLGPDGLPIPGCWHKGEPAWFKPKRKRMSQP
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggattcaacagagaaactaaaccaaaataaagactcagacgtcaagaaagtggtaccc
aagtctgagtttttcggggctttggtgtctttaccaacatgcctgtgcttaatgttgtca
gtcagttctgtggcgttttgttttttgttgagcttcaaaacttttcagttggaaaacaga
gtgaaagttttggagaaagaaaacgcaccagtgtttgctccggcagaaaccagtattctt
acagagggaaggactctattacctgtgatccgagatacgatagaaagtattctgcaagag
aggttaaatgaagcattgcctagactgcggacagccagggacctgcaggcacagtgctcc
tgccctccagggcctccaggaaaacgtggaaaggcaggaaggcaaggcgatcatgggcct
ccaggaacaccaggacgagatggctacccgggtccacttggtatggatgggaagccgggc
ccccctggatcgaaaggagataagggtgaccaaggggatgctggtccaaggatggtcttt
ccacgcttagatcacggattcctctctggcgatcagcctaactttcaaaggaggattctg
aagggggatcaggggcaggctggccccccagggccacccggccctccaggacccagggga
cctccaggggatacaggcaaagacggaccacggggacctcctggagagctgggggaagat
ggtgctcctggacagaagggagagaagggtattatgggtttccaaggtgaaagaggaatc
gatggattgtcaggaactaagggggagatgggtgcgcctggaattcctggattccctggg
ctaaagggtgaaccaggaagtgaagggccagctggtcccagaggtctacctggtcaaaag
ggtcatcaaggagcaactgagatcatagactatgatggaaggatacatgaagcccttcag
gctatccagactatcagtgtcatgggccctgctggcccccctggcccgcccggtcccaag
ggagatgcaggacccaagggtgaattgggattaccaggtatagctggagtgggcggagaa
cagggtcctaaaggagaggatgggatcccagggttagctggtcagagaggagagaagggg
gagatgggcttgtccggtcctgcgggtattgatggacagaaaggggagaagggagaaccg
tgcccatctagcctggaagaccatattgtccagatgatctcccagccaggaccgccagga
ctgccaggacctcctggtccacaaggtcccattgggcttacaggagctccgggcccagag
ggggagtctgggttagacggcttgaatggagagaaaggggagcctggagagaggggtccc
ccaggtcccacaggtttggttggccttcccggcaccaagggagaaaagggaaagactggg
gaaccaggattagatggttttccagggcaacgaggtgaaaagggggaccagggtgtgaaa
ggagataagggggagagagggacaacaggaaagagaggactaaaggggcacaaaggagag
caaggaccccctggattggaccagccgtgtccagtggggactccaggaggtagaggaggc
cagggagaggttggcatgcctggcctggatgctccctgtcccttgggtccagatggactg
cctataccaggatgctggcataagggtgaaccagcttggttcaaacccaagaggaaacga
atgtctcagccctag
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