Polyodon spathula (Mississippi paddlefish): 121324595
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Entry
121324595 CDS
T07273
Symbol
srsf5b
Name
(RefSeq) serine and arginine rich splicing factor 5b
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121324595 (srsf5b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121324595 (srsf5b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121324595 (srsf5b)
Spliceosome [BR:
pspa03041
]
Common components
Common spliceosomal components
SR proteins
121324595 (srsf5b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
Nup35_RRM_2
RRM_occluded
RRM_5
SET_assoc
Motif
Other DBs
NCBI-GeneID:
121324595
NCBI-ProteinID:
XP_041122596
LinkDB
All DBs
Position
12:19546761..19561876
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AA seq
270 aa
AA seq
DB search
MSGCRVFVGRLNPSAREKDVERFFKGYGRIRDIDLKRGYGFVEFEDPRDAEDAVYELDGK
ELCNERVTIEHARARLRGGRGRGGPGRFPDRYSRRSRDGRRNPPPVRTENRLIVENLSSR
VSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASSSDVRNALDKLSGKEINGRKIKLTE
AIRRRSRSRSRSRSSSRSRSRSRSRSRSRSRSRKSYSRSRSRSRSRSASRSPARDKEVKR
SSRAHSGSPHSPERRRSRSITRSPSAESRH
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgagtggctgccgtgtgtttgttggccgtttgaacccctctgcccgcgagaaggacgtg
gagagattcttcaagggctacgggaggatccgcgatatcgacctgaaaagaggttacggg
tttgtggagtttgaagaccccagagatgcagaagatgctgtttatgaactggacggaaag
gagctatgcaatgagcgagttacgattgagcacgcacgagcccggcttcgaggaggccga
ggaagagggggaccgggccgcttccctgaccgctacagcaggagatcgcgtgatggcagg
aggaatccccctccagttcgcactgaaaacaggctcattgtggagaacttgtcttccaga
gtcagctggcaggatctgaaagatttcatgagacaagctggagaggttacttttgctgat
gctcacagaccaaaactaaatgaaggggtggttgagtttgcttcttccagtgatgtcaga
aatgcccttgataagctgtctggtaaggagatcaatggaaggaaaatcaaactgacagag
gctattaggaggaggtcaaggagtcgatctcgttcccgcagctcctcgcgctcccgttcc
cgctctcgttccaggagccgctccaggagccgtagccgcaagtcttacagccgttcacgg
tcccgcagtcgctcccgctctgccagccgctcccccgcccgggacaaggaggtgaaacgt
agctcccgagcccactctggctccccacactcccctgagcgccgccgctccaggtctata
acgcgctcgccgtcagcagaaagcaggcactga
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