Polyodon spathula (Mississippi paddlefish): 121324636
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Entry
121324636 CDS
T07273
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2-like
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121324636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121324636
03036 Chromosome and associated proteins [BR:
pspa03036
]
121324636
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121324636
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121324636
PBAF complex
121324636
GBAF(ncBAF) complex
121324636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
121324636
NCBI-ProteinID:
XP_041122665
LinkDB
All DBs
Position
12:40306033..40327884
Genome browser
AA seq
511 aa
AA seq
DB search
MATRGGYPMTAGSPMNLGGNPVNPNINPMNSGQGVLRIPHAMQQNPGYRTMGTGASPYHQ
RQGMPPGRGMPMPGMGPVPGPSYGPGMPMRPGMLQQGMDPFRKRLLQQQQQHHLGMHNQR
RGIKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPITQKR
KLRIYISNTYTPAKPEGDEAEKVASWELRVEGKLLEDPGKQKRKFSSFFKSLVIELDKEL
YGPDNHLVEWHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLDLRLARLLGVH
TQTRANIMQALWLYIKNNKLQDSHEKEYINCNRYFRQVFNCNRMRFCEIPMKLAGLLQHP
DPIIINHMISHAECVDPNDQKKTACYDIDVEVDDPLKSQMSSFLSSTTNQQEIAALEVKI
HETIESINHLKTQRDFMLSFSNNPQEFIQDWLKSQCQDLKLMTDTVGNPEAERRSEFYEE
PWAQEAVGRYVFSKVQQRRQELEQVLGIRLT
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaagaggagggtaccccatgactgctggtagtcccatgaatttagggggtaac
ccagtgaatcctaatattaaccctatgaattcgggtcaaggtgttcttcggatacctcat
gcaatgcaacagaatccaggctatcgcaccatgggcacaggcgcctccccgtaccaccag
cggcagggaatgcccccaggtcgaggtatgccaatgccagggatggggcctgtccctgga
ccttcatatggtccagggatgcccatgaggcctggcatgcttcagcaagggatggacccc
ttccgaaaacgacttcttcaacagcagcagcagcaccaccttgggatgcataaccagaga
cggggaatcaagcgacggaaaatggcagacaagatacttcctcaaaggattcgagagctg
gttcctgaatctcaggcctacatggatctccttgcctttgagcgcaagctcgaccagacc
atcgctcgcaagcgcatggagatccaggaagctattaaaaagcctataacacaaaaacgc
aagttacgtatctacatctccaacacctatacccccgccaaaccagagggggacgaggca
gagaaggtggcttcgtgggagctgcgcgtggaaggaaagcttctggaagaccctggaaaa
cagaagaggaagttttcttccttctttaagagtttggtgattgagctggacaaagaactg
tatggaccagacaaccacctggttgagtggcaccggatgcctacaacccaggagacggac
gggtttcaggtgaagagacctggagatgtcaatgtgaagtgtactctcctgctaatgttg
gaccaccagcccccacagtacaagctggacctgcgtctggctcgtctgctgggcgttcac
acccagacccgcgccaacatcatgcaagctctgtggctctacatcaagaacaacaagctg
caggacagccatgagaaggagtacatcaactgcaaccgctacttcagacaggtgtttaac
tgtaatcggatgagattctgtgaaatcccgatgaagctggctggcctgttgcagcatcca
gaccccatcatcatcaatcacatgatcagccatgccgaatgtgtggacccaaatgaccag
aagaaaacggcttgctatgacattgatgtggaggtggacgaccccttgaaaagtcagatg
agcagcttcttgtcatcgaccaccaaccagcaggagatcgctgctctggaagtgaagatc
catgagaccatcgagtcaataaaccacttgaaaactcagcgggatttcatgctaagcttc
agtaacaacccccaggagttcattcaggactggctgaaatcccagtgccaggacctcaag
ctgatgacggacacggttggaaacccagaagcggagagaagatcagagttttacgaggag
ccctgggcacaggaggctgtcgggagatatgttttctcaaaggtacagcagcgcaggcaa
gaactggaacaagtgcttggaatccgcctcacctag
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