Polyodon spathula (Mississippi paddlefish): 121324660
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Entry
121324660 CDS
T07273
Name
(RefSeq) homeobox protein SIX4-like
KO
K15615
homeobox protein SIX4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121324660
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
121324660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_TSHZ3
DacZ_P
Motif
Other DBs
NCBI-GeneID:
121324660
NCBI-ProteinID:
XP_041122700
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Position
12:4290904..4299466
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AA seq
748 aa
AA seq
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MSSSSSEVICANEIKKERTGDSQETTKLLELDSVALSMEHAISTADQLQNELLVSAASAL
SFSPEQVACVCEALQQGGNVDRLARFLWSLPQSDLLRGNESILKAQALVAFHHGRYQELY
SILENQSFTPSNHSSLQDLWYKARYTEAEKARGRPLGAVDKYRLRRKYPLPRTIWDGEET
VYCFKERSRNALKELYKHNRYPSPAEKRNLAKITGLSLTQVSNWFKNRRQRDRNPSETQS
KSESDGNHSTEDESSKGHDDLSPRPLSNSPDGINNHHHSNSISLTSTTEGTIIQQIGDPK
TSSGSPGAVFNRNLVTANTPSVFFNGSSYIQTPSNILFNGLNVGGTQAIAFSPLRSTSNI
VSNGEIVLHSSDEKDFKLLNGPVTNSAMPYNLNTPSASFPAAINARDIKIGSLQTLASQE
GGPVVTLTTCNGPLQVNQYSLVQIPSAETSGQMVSGNLGLPHLQMPPVSTAPSHGNILLS
SAATGQGESFSNGPSSTVQQGKLVLSPVQPRTVLYTVPNTLQGVTSIKQEPAEGGLVFSQ
LMQVDQNSQLNVNVSSENLSGAVAQTVTSSLVNVTLNQNYSLVSPAVLGNSDPLNSHGSV
RPSAVVSSQPVCVAASNPPSGVSVGNASYATLQSSPLISTSAQSTLTVSESHLMLAADRG
EDSCRSGQHLSQDLRSPHVTVQQLVPTLKGNFLSISENKSSEDFLTLDSKSKCAVSEMVR
VICAEMETEEKRLAKLQNVQMDEDISDI
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcctcaagcgaagtcatatgtgcaaatgagattaagaaagagaggacggga
gactcgcaggagaccacgaaactgctagaactggattccgtagccctgtctatggagcat
gcaatttcaactgcagaccagctccagaacgaacttttggtgagtgctgcttctgccctg
tctttttccccagaacaagtggcttgcgtctgtgaggctttgcagcaaggtggtaacgtg
gaccgcttagccaggtttttgtggtcattgccccaaagtgacctactacgtggcaacgaa
agcatcctgaaagcccaagccttggtggctttccaccacggacgataccaggaactttac
agcattttggagaaccagagtttcaccccctccaaccactcgtccctgcaggacctctgg
tacaaggcacggtatacagaagccgagaaggctcgggggagaccactaggagctgtggac
aaatacaggctgaggagaaaatacccgcttccccggaccatctgggacggggaggagacg
gtatactgcttcaaagagcggtccaggaacgcgctgaaggagctttataagcacaacaga
tacccttcaccggccgagaaaagaaacctggcgaaaatcacagggctttcattaactcag
gtcagcaactggtttaaaaacaggaggcagcgggacagaaatccgtctgaaacgcaatcc
aaaagcgagtctgatggcaatcacagcaccgaagatgagtcgagcaaagggcatgatgac
ctctcccctcggcccttgtccaactcgccggacgggatcaataaccaccaccacagcaac
agcatctccctcaccagcactacagaaggcactatcattcaacagataggggatccaaaa
acctcttcaggttcacctggcgcagtgttcaacaggaaccttgtgacggctaacactcct
tcggtgttctttaatgggagctcctacattcagacgccaagtaacatcctcttcaatgga
cttaacgtgggaggaacccaggccattgccttcagcccgctgaggagcaccagcaacatt
gtaagcaatggagagatcgtgctgcactcgtctgatgagaaagattttaagctcctcaat
ggacctgtgactaactctgccatgccttacaatctcaacacgccgagtgcctctttccca
gcagccattaatgccagagatatcaaaattggaagcttacagaccctcgcttctcaagag
ggaggacctgtagtcactttgacaacatgcaatggaccccttcaagtcaaccagtacagc
cttgttcaaatcccctctgctgaaaccagtgggcagatggtcagtgggaaccttgggctt
ccacatttacaaatgcctcctgtctcaacagcgccttcccatggtaacattttattaagc
agtgctgccactggacaaggggaatccttctccaatgggccatcctcaacagtgcagcag
ggcaaactagtcctctcccctgtccagcctcgcactgtgctgtacacggtcccaaacacg
ttgcagggggtgacctccatcaagcaggagcctgcagaggggggtttagtgttttctcag
ttgatgcaagtcgatcaaaacagccagctaaatgtgaatgtgtcttcagaaaacctttcc
ggggccgttgcacagactgtgacctcgtctctggtcaatgtaactttgaaccagaattac
tctctggtgtcgccagctgtcctcggcaattcagaccctttgaactctcacggctcagtg
aggccctcagcagtagtgtccagccagcctgtctgtgtggcagccagtaacccacccagc
ggagtgtcagtgggcaacgccagctatgcaactcttcagagcagccctctgatctccacg
tcagctcaaagcacgctgaccgtctctgagtcccacctgatgctggccgcagaccggggg
gaggactcctgcagatcagggcagcatctttctcaagacttgaggagcccgcacgtcaca
gtgcagcagctagtccccacactgaagggcaacttcctttccatttcagagaacaaatcg
agtgaggatttcctgacgctcgactccaagtcaaagtgtgcagtgagtgaaatggtgaga
gtcatctgtgcagagatggagacagaagagaaacggcttgcaaaactgcaaaatgtccaa
atggatgaagacatcagtgatatctaa
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