Polyodon spathula (Mississippi paddlefish): 121324861
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Entry
121324861 CDS
T07273
Name
(RefSeq) polycystic kidney disease 2-like 2 protein
KO
K04986
polycystin 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pspa03037
]
121324861
04040 Ion channels [BR:
pspa04040
]
121324861
Cilium and associated proteins [BR:
pspa03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
121324861
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121324861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_channel
Polycystin_dom
Ion_trans
EF-hand_1
EF-hand_6
EF-hand_7
GyrB_insert
HTH_54
Motif
Other DBs
NCBI-GeneID:
121324861
NCBI-ProteinID:
XP_041123005
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All DBs
Position
12:complement(28681300..28699855)
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AA seq
733 aa
AA seq
DB search
MHSLGKDDKPSRNKKRQALKKSSCESTEKTIQAHKSSSRDLRIKTTLQDLLIYIIFLIDI
CILTFGQISTDMYYHTKVMSKLFLESSLSEKDKSNYKSLGSMEDIWTYFEGPLLDGLYWD
SWYNKKSLPTNESHIYYENVLLGVPRIRQVKVVNKSCPLHSSFVSITQCFDSYLSEEEDK
SPFGPKNGTAWEYMAPRSIPESHWGMIATYSSGGFYMDLGSTKSKSAKLIKNLKDNLWLS
RATRAVFVDFSVYNANLNLFCVVRLVAETPATGGVLTSWEFYSVKLLRYISKYDYFLASC
EVLFILFIFAFFIQECIDIYKTKWNYFKNGWNCIDVLLVVLSLMAIFFNVYRTVNVESLL
YRLLKNPHKYPNFHFLAFWQTQYNNMIAVNVFISWVKVFKYISFNRTMSTLSSTLSHCAK
DIIGFAVMFFIVFFAYAQLGYLLFGCQVDSFSSFKNCIFTQFLVILGEINFNELEQANRI
LGPIYFTTFVFFVFFVLLNMFLAIINDTYAEIKCDQSLQMTEYEMSDFIKKTCNTALVKL
RLKKEQLVDNITESIRGTEGIISVKQFQVEMLKKGYTEEETKEVFMKYDVNRDRKLSKKE
VDTMTSELEKQEYDLAQQHSALKKDTTHGEEEDLPSPPEFVSKQDYQRMVKHVFQLEERI
DDITFMNNKLLIQLNSLESITSTESREKDDWDFLPPTPYPPPHKHSYTKSKFRQLLKSSN
VNELEEEEGPKLE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgcactccttaggaaaggatgacaaacctagtaggaacaagaaaagacaagcattgaag
aaaagcagctgcgagtcaactgaaaaaactatacaggcacataaatctagtagcagagac
ctgcggataaaaacaacattacaggatttacttatctacattatcttccttatagatatc
tgcatattaacatttggtcagataagcactgacatgtactaccacaccaaagtcatgtcc
aagttgttcttggaaagtagtctttcagaaaaggataagagcaactataaatcattggga
agcatggaagacatttggacgtattttgaaggacctttactggacggcctctactgggat
tcatggtacaacaaaaagagcctacctacaaatgaaagccatatttattatgaaaatgtg
ctgctgggagttccacgcattcgacaagtcaaagtggttaataaatcttgccctttgcat
tctagttttgtttcaataacacagtgctttgattcatacttgtctgaagaagaagataaa
tcaccttttggaccgaagaatgggacagcctgggaatatatggctcccagatctattccg
gaaagccattggggtatgatagctacctacagcagtggagggttttacatggaccttggt
agcacaaagagcaagagtgccaagttgattaaaaatctcaaagacaacctgtggctgtcc
agagcaacaagagcagtctttgttgacttctctgtttacaatgctaaccttaaccttttc
tgcgtggtcaggttagtggcggagactccagccactggaggagtccttacatcctgggag
ttttactcagtgaagcttctccgttacatctctaaatatgattacttccttgcatcatgc
gaggttttattcattctatttatttttgcctttttcatccaagagtgtattgacatctat
aaaacaaaatggaactacttcaaaaatggttggaactgcatagatgtgcttttagttgtg
ctatctttgatggctatctttttcaacgtttatcgcactgtgaatgttgaaagcttgctt
tatcgcctgctcaagaatccacacaagtaccccaattttcattttcttgccttctggcag
acacagtacaataacatgattgctgtcaatgttttcatatcctgggtgaaggtattcaaa
tatataagttttaacaggacaatgagtaccctctcttctactttgtcccactgtgccaaa
gacatcattggctttgcagtcatgtttttcatagttttctttgcttatgcacagttgggg
tacctcttgttcggctgccaagtggacagcttttctagttttaaaaattgcatctttaca
cagttcctagtaattcttggagaaatcaacttcaatgagcttgagcaagcaaacaggatt
ctggggccaatttatttcacaacctttgtattctttgtattctttgtgcttttgaacatg
tttctggctattattaacgatacatatgcagaaattaaatgtgatcagtcacttcaaatg
acagagtatgaaatgagtgatttcatcaagaagacttgcaatacagccctagttaaacta
cggcttaagaaggagcagctggtggacaacatcactgaaagcataaggggcacagagggg
atcatatctgtgaaacaattccaggtggagatgttgaagaaaggctatacagaagaagaa
actaaagaagtctttatgaagtatgatgtaaacagagatagaaaattgagcaagaaagag
gttgacactatgacaagtgaacttgagaaacaagagtatgatctggcccaacagcactct
gccctgaagaaagacactacacatggtgaagaggaggatcttccgtcacctcctgaattt
gtatctaagcaagactatcagcggatggtgaaacatgttttccagttggaggagcggatt
gatgacattacattcatgaacaataaactacttatacagttaaattctttagaatcgata
acatcgacagaaagtcgtgaaaaggatgactgggactttcttccccccaccccctatccc
ccaccccacaaacactcctacaccaagagtaagttcaggcagctgttaaaaagctcaaat
gtaaatgagctagaagaagaggaggggcccaagctggagtga
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