Polyodon spathula (Mississippi paddlefish): 121325047
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Entry
121325047 CDS
T07273
Symbol
htt
Name
(RefSeq) huntingtin isoform X1
KO
K04533
huntingtin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121325047 (htt)
04131 Membrane trafficking [BR:
pspa04131
]
121325047 (htt)
03029 Mitochondrial biogenesis [BR:
pspa03029
]
121325047 (htt)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121325047 (htt)
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
121325047 (htt)
Mitochondrial biogenesis [BR:
pspa03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
121325047 (htt)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT_GCN1
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
121325047
NCBI-ProteinID:
XP_041123293
LinkDB
All DBs
Position
1:complement(97955111..98033492)
Genome browser
AA seq
3115 aa
AA seq
DB search
MATMEKLMRAFESLKAFQQQGPPTAEELVQKQKKDPSTTKKDRVTHCLTICENIVAQSLR
NSPEFQKLLGIAMEMFLLCSDDGESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIKK
NGASRSLRAALWRFAELCHLVRPQKCRPYLVNLLPCLTRISKRPEEAVQETLAAAVPKIM
AALGNFANDLEIKVLLKSFVGNLKSSSPTIRRTAASSAVSICQHSRRTQYFYTWLLSVLL
GLMVPVEEEHPAALILGVLLTLRYLMPLLQQHVKDTSLKGSFGVTRKEAEVSPTQEQLVQ
VYELTLHYTQHHDHNVVTAALELLQQTFRTPPSDLLHALITAGSVPRVSISREEAENRNR
SRSILELIASGVSSCSPLLLRKQKGKLLSGEEEGLEDDTETRSEVSTGTFTGSVNTESGS
EIPSSSGVSTLGSANSSGGHDIITEQPRSSQHNLQSTDSVELSGASDTVSSTASTAAGGE
GTEDEDVLSRSSSQISTSAGPSDPSNQASSPASESSQTTTEGPDSAVTPSDCSELVLDGS
ESQYSGMQIGQLQDEEEEGTSHPHETPLELFSDSTLALSKPHLLESKSHSRQPSDSSVDR
LIPKDEALESAELENKPSRIKGEIGHYTDQNAAPLVHCVRLLSASFLLNGQKNGLVPDKE
VRVSVKALAVSCVGAATGLHPEAFFNKLYRAPLEGIEPEEQQYISDILKYIDHGDPQIRG
ATAILCGTIICSILNKTRFNVESWLANVKTSTGNHISLVDCVPLLQKTLKDESSVTCKLA
CTAVRHCIMTLCSSSFSELGLQLIVDLLTLRNSSYWLVRTELLETLAEIDFRLVSFLERT
ENLHKGDHHYTGLLKLQDRVLNDVIICLLGDEDPRVRHVAATTATRLVSRLFYDCDQGQA
DPVVAIARDQSSVYLQLLMHETQPPSHFTVSTIIRTYRGFSISQCVSDVTVENNLSRVIT
AVSHALTSSTSRALTFGCCEALCLLSSAFPVCTWSLGWHCGYVTSSGTHPSRSSLYKNRG
RSFSLSQSGPTDDFRKNCNVGMAHMVLSLLSSAWFPLDLSAHQDALLLMGNLLAAAAPKS
LKKPWTAEEEATAGVNKQEEPWPALGDRTVVTMVEQLFSHLLKILNICAHVIDDVAPGPA
LKASLPSLSNTPSLSPIRRKGKEKEPIEQNTTPLSPKKITDTNPAARPADTAGATATNKS
STLGSFYHLPPYLKLFDVLKATHANYKVTLDLHNNTEKFGGFLRSALDVLSQLLELATLQ
DIGKCVEEILGYLKSCFCREPTTATVCVQQLLKTLFGTNLASQYEGSSSNPSKSQGKAQR
LGSSNLRLGLYHYCFMAPYTHFTQALADASLRNMVQAEHEQDASGWFDVLQNVSTQLKSS
ITSVTRHRADKNAIHNHIRLFEPLVIKALKQYTTTTSVYLQRQVLDLLAQLVQLRVNYCL
LDSDQVFIGFVLKQFEYIEVGQFRDSEAIVPNIFFFLVLLSYERYHSKQIIGIPKIIQLC
DGIMASGRKAVTHAIPALQPIVHDLFVLRGSNKADAGKELETQKEVVVSMLLRLIQYHQV
LEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQMHLDSHEALGVLNTLFETVAPS
SLRPVDMLLRSMFVTPATMCSVGTVQLWISGILAILRVLISQSTEDIVLSRIQELSLSPY
LISCANIERLRDYYCQTPPSDEVNGDAQGKYPPEETFARFLIQLLGIQMEDISTKQLKVD
MSEQQHTFYCQQLGTLLMCLIHIFKSGMFRRITAAATKLFKGDGCEGSFYSLDNLNSMIQ
SLITTHPSLVLLWCQVLLLINYTNYTWWAEVHHTPRRHSLSSTKLLSPHVSDDSDESKPE
SKLAMCNREIVRRGALILFSDYVCQNLHDSEHLAWLIVNHVRDLINLSHEPPVQDFISAI
HRNSAASGLFIQAIQSRCENLSTPTVLKKTLQCLEGIHLSQSGAVLMLYVDKFINTPFRV
LARMVDTLACRRIEMLLAETLQNSIAQLPLEELDRIQQHLQSSGLAQRHQRLYSLLDRFR
ATVLEDSASPSPPVTSHPLDGETPPPPESVTADKDWYVMLVRSQCCTHTDTALLESTELL
TKLPQEDLCSIMVSKEFNLNLLAPCLSVGLKRVSGEQGSALFETTLTVTLEQVSSFSQLL
PSSHQVFQPLLSPGNTTYWNKLSNIYGEVGLYQTIVSLCRALTQYLLSIPKLPAALHIPS
DKEVDATKFVILALETLSWRLISGQVPLSIDLQTILDCCCLALQHSGIWSLLASAAYVTH
ACSFVNCIKFLIEAVAVEPGDQLLRPERKKMSRAQAAQDELDAASTEIPIHIKKACETMA
ELVESLQTVLALGHSRNEIIPAFLTPTLRNITLSLARLPLVNSYIRVPPLVWKLGWSPKP
GGEFGTAFPEIPVEFLQEKDVFREFLYRMNTLGWTNRTQFEETWATLLGVLVTQPIVMDH
EEENQHEEDLERTQINVLAVQAITSLVLSAMTIPVAGNPAVSCLEQQPRNKALKALDTRF
GRKLSVIRGIVEQEIQAMVSKRDNIATHYPYQAWDPVPSLSAAKTGTLISHEKLLLQINT
EREMGNMDYKMGQVSIHSVWLGNRITPLRQEEWDEDEEEESDVPAPVSPPTSPINSRKHR
AGVDIHSCSQFLLELYSQWILPNNPNNKKTPVILISEVVRSLLAVSDLFTERNQYEMMYS
TLTELQKVHPAEDEILNQYLIPAICKAASVLGMDKAIAEPVSRLLETTLRSTHMPSRIGA
LHGILYVLECDLLDDTAKQLIPIISDYLLSNLKGVAHCVNLHNQQHVLVMCAAAFYMIEN
YPLDVGPEFTAGIIQMCGVMVSGCEDSTPSVTYHCVLRGLERLLLSEQLSRLDGEALVKL
SVDRVNMPSPHRAMSALGLMLTCMYTGKEKTSPSRTSDLDTTAPDSESVIVAMERVSVLF
DRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQT
LHATGQSSMVRDWVMLSLSNFTQRTPVSMAMWSLSCFFVSASTSQWISALLPHVISRMGK
SELVDVSLFCLVAMDFYKHQIDEELDRRAFQSVFEVVASPGSPYHRLLTCLKTIL
NT seq
9348 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaaactgatgagggccttcgagtctctaaaggcattccaacagcag
ggaccaccgacagccgaggagctagttcaaaaacagaagaaggacccttctacgaccaaa
aaagacagagtgactcattgtctcactatatgtgaaaatattgttgcacagtctctgaga
aactcgccggaattccagaaattgctcggcatcgccatggagatgttcctgctgtgcagt
gatgacggggaatcggatgtcaggatggtagctgatgaatgcctgaacaaaatcattaaa
gccctcatggattccaaccttccacgattacaattggaattatataaagagattaaaaag
aacggtgcttcaaggagcctgagagccgcgctgtggaggtttgcagagctttgtcatctt
gtacgcccacagaaatgcaggccatatctggtcaatctgctgccctgcctgacacgcatc
agcaagcgaccagaggaagcagtgcaggagacactggcagcagccgtcccaaagatcatg
gcagcgctggggaactttgccaacgaccttgaaatcaaggttctactgaaatcttttgtt
ggaaatctcaagtccagctctccaactatccgccgcactgcagcaagctctgcagtcagt
atctgccagcactcgcgcaggactcagtatttctacacctggctactgagtgtactctta
ggtttgatggtccctgtggaggaggagcatcctgccgctctgatcctgggggtcctgctc
acactgaggtacttgatgccattactgcagcagcatgtgaaggataccagtctgaaaggc
agcttcggggtcactcgcaaagaggctgaggtctcccccacccaagagcagctcgtccag
gtgtatgagctgacccttcattatacgcagcaccacgatcacaatgtggtcacggcagcc
ttggaactgctacagcagacgttccgcacgccaccctctgacctcttgcacgcgctcatc
actgcgggcagcgtgccccgggtcagcatctcccgagaggaggcagagaaccgcaaccgc
agccgcagcatcctcgagctcatagccagtggggtgtcatcatgcagtcctctgctactc
agaaaacaaaaaggcaagctgctctctggagaagaggaagggctggaggacgacactgaa
acaaggtcggaggtcagcactggaaccttcactggatcagtgaacacagagagtggcagc
gagatcccttcctcctcgggcgtgtcaactctggggtcggccaactcttcagggggccac
gacatcatcacggagcagcctcgctcctcccagcacaacctgcagtcgaccgactctgtg
gagttgagcggggcctcagacacagtgagtagcacggcctccaccgcggccggcggagaa
ggcaccgaggacgaggacgtgctaagccgcagctccagccagatcagcaccagcgccggc
ccctctgaccccagcaaccaggcctcctcgccagccagcgagagctcccagaccaccact
gagggtcctgactctgctgtcaccccgtccgactgttcagagcttgttctagacggcagc
gagagccagtattccggaatgcagatcggacagcttcaggatgaggaggaagagggcaca
agccatccacatgaaacacccctggaactctttagtgattccactctggcactgagcaaa
cctcacttgctggaaagtaagagccatagtcgacagccctccgacagcagtgtggatcga
ttgataccaaaggatgaagccttagagtcagcagaacttgaaaacaagccctccagaatc
aaaggggagattggtcactacacagatcaaaacgctgcacctctggtccactgtgtacgt
cttctgtctgcatcttttcttttaaatggacaaaaaaatggccttgtcccggacaaagag
gtgagggtgagcgtcaaggccctggctgtgagctgtgtgggagcagcaactggtcttcac
ccagaggcgttcttcaataaactgtaccgagcaccactggaaggaatcgaaccagaagaa
caacagtatatatctgatattttaaagtacattgatcacggagatccccagatcagagga
gctactgcaatactgtgtggaacaataatctgttccatcctgaataaaacgcgcttcaat
gtagaaagctggttagctaatgtcaaaacttctactggaaaccacatttccctggtggac
tgtgtgcctttactacaaaagaccctgaaagatgaatcttcagttacatgtaaactggcc
tgcacagcagttcggcactgcatcatgactctgtgcagcagcagcttcagtgagctcggc
ctgcagctaattgttgacctcctcaccctgaggaacagttcctattggctggtgaggacg
gagctgctggaaacattggctgagatagattttagattagtaagtttccttgaaagaact
gagaacttgcacaagggggaccaccactatactgggctgctgaaactccaggaccgggtt
cttaatgatgtcatcatctgcctgcttggagatgaggatcccagagttcgtcatgtggca
gccactactgcaaccaggcttgtctccaggttgttctatgactgtgatcaaggccaggct
gacccagtggtagctatagcccgagaccaaagcagcgtctacctgcagcttctgatgcac
gagacccagccaccatctcacttcacagtcagcaccatcataaggacgtacagaggattc
agtatttcacagtgtgtgtctgacgttactgtggagaacaatctctccagggttatcacg
gctgtgtcccacgcactgacatcatccacttcacgagctcttacttttggctgctgcgaa
gctctgtgtctcctttcatccgcattccctgtttgtacatggagtttagggtggcactgt
gggtatgtgacctcctccggtacccatccttccagatcaagcctttacaaaaacagagga
cgctcattcagcctgtctcagtcaggccccactgatgatttccggaagaactgcaacgtg
gggatggcccacatggtcctgtccctcctctcctcagcctggttccctctcgatctgtca
gcccaccaggatgcactcctgttgatgggcaacttgctggcagcggcagcccccaagtct
ctaaaaaaaccctggacagctgaagaggaggcgactgcaggtgtcaacaagcaggaagaa
ccgtggccagctctgggggaccggacagtggtcaccatggtggagcagctcttctctcat
ctcttgaagatccttaacatctgtgctcatgtcattgatgatgtggcacccggccctgct
ctaaaggcaagccttccctcactctctaatacaccatcattgagccccataaggagaaag
ggcaaagagaaggagccaatagagcaaaacacaacacctctgagccccaaaaagatcaca
gacaccaatccagcagccaggccagcagacactgctggggccactgcaacaaacaagtcc
tccaccctgggcagtttttaccacctccctccatacctgaaactgtttgacgttttgaag
gctactcacgctaactataaggtgaccctggaccttcacaataacactgaaaagtttggt
ggattcctgcggtcagcattagatgttttgtctcagctgttagagcttgcaaccctccag
gacattggaaagtgtgttgaggagatccttggatacctgaagtcttgcttctgcagagaa
ccgaccacggccactgtttgtgttcagcagcttttaaagactctctttgggacaaacctt
gcatctcagtatgaaggctcctcctccaaccccagtaaatctcagggcaaggcccagcgg
ttaggatcttccaacctgcgccttgggttatatcattactgcttcatggctccatacaca
catttcacacaggcactggctgacgccagcctaaggaacatggtgcaagctgaacatgaa
caggacgcctcaggatggtttgatgttctgcaaaatgtctccacccaattgaagtccagc
atcacgagtgtaaccaggcatcgagctgataagaatgcaatccacaatcacatccggctg
tttgaacccctggttatcaaagctctgaagcagtacacgaccaccacctctgtgtacctg
cagagacaggtgctggacctgctggcacaactagtgcagctgcgggttaactactgtctc
ctggactctgatcaggtgtttattggatttgttctgaagcaatttgaatacattgaagtg
ggacagttcagggattcagaagccattgttccaaatatctttttcttcttggttctgctc
tcttatgagcgctatcactccaaacaaatcattgggatcccaaaaatcattcagctgtgc
gacggcatcatggcgagtggcaggaaggcggtcacacacgctattccagcgttgcagccc
atagtccatgatctttttgtcttgagagggtccaacaaagctgacgcaggcaaagagctg
gagacccagaaggaagtcgtggtctccatgctgctgagacttatacagtaccatcaggta
ctggagatgtttatactggtgctacagcagtgtcacaaagaaaacgaagataagtggaag
agactgtcacgtcagattgctgacatcattctgccaatgctggcaaaacagcagatgcac
ttggattctcatgaagccctgggggtgttaaacaccctgtttgagacggtagctccgtcc
tcgctgcgtccagttgacatgctgttgaggagcatgtttgttactccagccaccatgtgc
tcggttgggacagtccagctgtggatatctggaatcctggcaatcctacgtgttctcata
tcccagtcgacggaagacattgtcctgtctcgcattcaggagctgtccttgtctccttat
ctgatctcttgtgccaacattgagaggctcagagactactactgtcagacccctccttcg
gacgaagtgaatggagatgcacaaggcaaatacccccctgaggagacgtttgcaaggttc
ctaattcagctactggggattcagatggaagatatttcgaccaaacagctgaaagtggac
atgagtgaacagcagcacacattttactgccagcagctcggcacacttctcatgtgcctc
atacacatcttcaagtcaggcatgttcagaagaatcactgcagctgctaccaagctgttc
aagggggatggctgtgaggggagtttttacagcctggacaatctgaacagcatgatccag
tctctgatcaccactcacccctccctggtgctgctgtggtgccaggtcctgctcctcatc
aattacaccaactatacctggtgggcagaggtgcatcatacacccagaagacacagcctg
tccagcactaagctgctcagtccacacgtatctgacgacagtgatgagtccaaaccagag
tccaagctggccatgtgcaatcgagagatcgtccggaggggagcgctgatacttttctct
gattacgtgtgtcagaaccttcatgattccgaacacctggcatggctgatagtgaaccat
gtgcgtgatttgattaatctctcccatgagcctccggtgcaggattttatcagtgccatc
cacaggaactctgctgccagcgggcttttcatccaggctattcagtcacgttgtgagaac
ctctctacgccgactgtgctgaagaagaccctgcagtgcttggaggggattcacctcagt
cagtcaggcgctgtgttgatgctgtatgtggataaattcatcaatacccccttccgtgtg
ctggctcgcatggtggacacactcgcttgtcgaaggatagagatgctcctggctgagact
ttgcagaacagcattgcccagttaccacttgaggagttggacaggattcaacagcatcta
cagagcagtggcttagctcagaggcatcagagactgtactccctgctggataggttccgg
gccacagttttggaggactctgcgagcccttcgccaccagtgacgtcacaccccctagat
ggggagacgccacctcccccagaatctgtcaccgcagacaaggattggtacgtgatgctg
gtgagatcgcaatgctgcacgcacacagacacggctctgctggagtcgacagaactgcta
accaagctaccccaggaagacctctgctccatcatggtatctaaggaattcaatttgaac
ctactggccccctgtctcagtgtgggtctcaagagagtctctggagagcagggcagtgcc
ctcttcgaaaccacactcacggtaaccctggagcaggtttccagcttctcccagctttta
cccagcagccaccaggtgtttcagccactgttgtcacctggaaataccacctactggaac
aaactgagcaacatctatggtgaagtgggcttataccagactatagttagtctctgcaga
gctttgacccagtatctgctgtcaatccccaagctacctgcagcgcttcacatccccagt
gacaaggaggtggatgccaccaagtttgtgatattggcacttgagactctgtcgtggcgc
ttgataagtggacaggttccactgagcattgatctccaaactatcctggattgctgctgt
ctagccttgcagcactcggggatatggagcttgctggcttcagctgcttatgttacacat
gcctgttcatttgtaaactgcatcaagtttctcatcgaagcagtggcagtcgagcctggg
gatcagcttctgcgtccggagaggaagaagatgagcagagctcaagcagctcaggatgag
ctggacgctgcttccacagagattccaatacacatcaaaaaagcttgtgaaacaatggct
gaactggtggaaagcctgcagactgtcttggctttaggacattctagaaatgaaataatc
ccagcgtttctgactcctacactccgcaacataaccttaagcctggcgcgactgcctctt
gtcaacagctacattagagttcctcccctagtctggaaattaggctggtccccaaaacct
ggtggagagtttggcacagcttttcccgagatcccagtggagttcctgcaggagaaggat
gtgttccgggagttcctgtatcgcatgaacactctgggatggacaaatcgcactcagttt
gaagagacctgggcgaccctccttggtgtgctggtgactcagcccattgttatggaccat
gaagaggaaaaccaacacgaggaggacctggagaggacccagatcaatgtcctagctgtc
caagcgatcacatccttggtgctgagcgccatgacaatcccagtggcaggaaaccctgcc
gtcagctgcctggagcagcagccgcgcaacaaggcattaaaagctctggataccaggttt
ggaagaaagctgagtgtgatccgagggattgtggagcaggagatccaggcgatggtgtca
aagagagacaacatagccactcattacccatatcaggcctgggaccccgttccatccctc
tctgctgcaaaaacaggtactttaatcagccatgaaaaactgctgctgcaaatcaacact
gaacgggagatggggaacatggattataaaatgggacaggtgtccattcactcagtttgg
ctgggaaaccgcatcacacccttgaggcaggaggaatgggatgaagatgaggaggaagag
agtgacgtccccgctccagtgtcgcctcccacctcgcccatcaactccaggaaacaccgt
gctggtgtagatatccattcctgctctcagtttctcctggagctctacagccagtggatt
ctgccaaacaacccaaacaacaagaagaccccagtcatcctgatcagcgaagtggtccgc
tcactgctggcagtatctgatttgttcaccgagaggaaccagtatgagatgatgtacagc
acgttgacagagctgcagaaggtacaccccgctgaggatgagatcctgaatcagtacctc
atacctgctatttgtaaggctgcatctgtcctcggcatggacaaggccatagcggagccg
gtcagccgcttgctggagaccaccttgcgcagcacccacatgccgagccgcatcggagca
ctgcacggcatcctctacgtgctggagtgtgacctgctggatgacacagccaaacagctc
atccccatcatcagcgactacctgctgtccaatctgaaaggagtagcacactgtgttaac
ctccataaccagcagcatgtgttggtgatgtgcgctgcagctttctacatgattgagaac
tacccacttgatgtggggccagaattcacagcaggaattatccagatgtgtggtgtgatg
gtgtctggctgcgaggactccaccccctctgtgacctatcactgcgtcctgcgagggctg
gagcgcctcctgctgtccgagcagctgtcccgcctggacggggaggcgctggtcaagctc
agtgtggaccgggtcaacatgcccagcccacaccgggccatgtctgcactggggctcatg
ctcacatgcatgtacacagggaaggagaaaactagtcccagtcgaacatctgaccttgat
accactgctcccgacagcgagtctgtcattgtggccatggagagagtatctgttctcttt
gatagaatccggaagggatttccctgtgaggcaagggtagtggcccgtatcctcccccag
tttctcgatgacttcttcccaccgcaggatgtgatgaacaaagtcattggcgagtttctg
tccaatcagcagccttatcctcagttcatggcaactgttgtttacaaggtattccagacc
ttgcatgctacaggacaatcctccatggtccgagattgggtcatgctttcgctctccaac
ttcactcagaggacacccgtctccatggcgatgtggagtctttcctgtttctttgtcagc
gcttcaacaagccagtggatttcagccctccttcctcatgttatcagcagaatggggaaa
tccgagcttgtggatgtcagcctgttctgtctggtggccatggacttctacaaacaccag
attgatgaagagctggatcgccgagccttccagtccgtgtttgaggtggtagcctcccct
ggcagcccctaccaccgcctgctcacctgcctgaagaccatcctctga
DBGET
integrated database retrieval system
