Polyodon spathula (Mississippi paddlefish): 121325133
Help
Entry
121325133 CDS
T07273
Symbol
lrrc29
Name
(RefSeq) F-box/LRR-repeat protein 16 isoform X1
KO
K10275
F-box and leucine-rich repeat protein 9
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121325133 (lrrc29)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121325133 (lrrc29)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_4
LRR_6
LRR_At5g56370
LRR_NXF1-5
F-box_5
LRR_RPS2
LRR_Zer-1
LRR_8
LRR_At1g61320_AtMIF1
F-box-like
F-box
wHTH-PRTase_assc
SAM_Ste50p
DUF7446
Motif
Other DBs
NCBI-GeneID:
121325133
NCBI-ProteinID:
XP_041123364
LinkDB
All DBs
Position
13:41064908..41071069
Genome browser
AA seq
673 aa
AA seq
DB search
MLNNSTSENRSVISGAGCTFEMDTPELPVENSCVHMEQVITYILSFLQGPDRKDASLVCK
IWYLASQDYQFKKKVTYRFPASSVSLDGIRGLGRHPCYSVAISHLDSSPFSRAILQQVAL
HLGPRLECLSLRGSSITESSFLAVAPHLPALRRLDLSCCDSLFMSGTLLSKEESRQAVRA
ALRNLEELDLSSLHFLSDLTFNRLTGCSPDLRRLSLAGCHIAFQFDPYRGSSVGCDSTAM
LSLKNLHRFLSERAPSLKGLNLGRTGVTPEGLRSLVQVRGLCLEELTLQGCKDLTDQAMT
ALWKWQPGLKTLDLSFCTELSDKTLLAISSNLKELQCLNLAKNRRITDSGLSDLMELKCL
QSLDFSECSYISGGQLVKGLYSPQAQARLVSLSFSSCTLITDLTMFSLAQLVGPSLRVLD
LTSCLYLTDLSVRAITTYLPGLVVLRLGWCKEVSDWGLLGLEEPTQECKPDKEKDDKGPK
FSRNFGNMGFFSPPKRYLEEKPRRVTKQDLVEFGEREGASLLALRDLQELDLTACTKLTD
ASITQVLRFQDLRTLSLSMLSEITDSSLVSVASHCRGLTRLNLSHCPTLTDHGLSIAARS
LHRLQHLHLSCCDKITDRSLTVLAEECKALKSLDVSMCKKVSMAAVELLQSQLPSLENTH
TLFVGGADLFFTL
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgttgaataactcaacaagcgagaatcgatcggtcatttctggtgccggctgcacattt
gaaatggatactccagagttacctgtcgagaattcttgtgtgcatatggagcaggtaata
acttacatcctgagcttcctgcaagggccagacagaaaggatgcctcactggtctgcaag
atctggtacttagcttcccaggactaccagtttaagaagaaggtcacctacaggttcccc
gcctcctccgtctccctggatggcatcagaggcctgggccggcacccctgctacagtgtg
gccatcagccacctggacagctctcccttctccagagccattctccagcaggtggccctc
catctgggaccccggctagagtgcctgtccctgcggggcagcagcatcactgagtcctcc
ttcctggccgtggcgcctcacctccccgccctccgcaggctggacctgagctgctgcgac
agcctcttcatgtcgggcaccttgctgtcgaaggaggagagcaggcaggcggtcagggct
gccctgaggaacctggaagagctggacctctccagcctgcacttcctctctgacctcacc
ttcaatcggctgacagggtgctcgccagacctgcggaggctgtccctggctggctgccac
atcgccttccagttcgacccctacagaggctccagtgtgggctgcgactccactgccatg
ctctccttgaagaacctccacaggttcctatcggagcgggcgccgagcttgaaggggctc
aatctgggtcggactggcgtgacgcctgagggtctcagatccctggttcaggtgaggggc
ctctgcttagaggagcttaccctccaggggtgcaaggacctcacagaccaggccatgact
gccctctggaagtggcagcccggcttgaaaaccctggatctcagcttctgcacggagctg
tccgacaagaccttgctggccatttcttccaatctcaaggagctccagtgtctgaatctg
gcgaagaacaggagaattacagacagtggcctctcggacctcatggagctgaaatgcctg
cagtccctggacttctctgagtgcagctacatcagtgggggccagctggtcaaaggactg
tattcccctcaagctcaggccaggctggtgtctctcagcttcagcagctgcacactcatc
acggacctcaccatgttctcattggcccagctggtgggccctagtctgcgggtgctggac
ctcacttcctgtctgtacctaacggacctgagcgtgcgcgctatcaccacctatctgcca
ggcctggtggtgctgaggctgggctggtgcaaggaggtcagtgactgggggctgctggga
ctggaggagcccacccaggagtgtaagcctgataaggagaaggacgacaagggacccaaa
ttcagccgtaatttcggaaacatgggcttcttctcccctcccaagaggtacttggaggag
aagcctcggcgggtgaccaagcaggacctggtggagttcggggagagggagggggcctct
ctgcttgcactccgggacctccaggagctcgacctgactgcctgcaccaagctgacagac
gccagcatcacccaggtgctccgattccaggacctgcggaccctgtctctgtccatgctg
agtgagatcaccgacagcagcctggtctcggtggcctctcactgccgtggcctgacccgc
ctgaacctcagccactgccccacgctgactgaccacgggctctccatcgccgcacgcagc
ctccatcgactgcaacacctccacctgtcctgctgcgacaagatcactgaccggtccctg
accgtgctggcagaggagtgcaaggcgctcaagagcctggacgtgtccatgtgtaaaaag
gtttccatggcagcagtcgagctcctccaatcacagctccccagcctggagaacacccac
actctctttgtaggcggggctgaccttttcttcaccctctga
DBGET
integrated database retrieval system
