Polyodon spathula (Mississippi paddlefish): 121325142
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Entry
121325142 CDS
T07273
Name
(RefSeq) PDZ and LIM domain protein 1-like
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121325142
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121325142
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
121325142
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
PDZ_6
LIM
PDZ_2
Hamartin
Motif
Other DBs
NCBI-GeneID:
121325142
NCBI-ProteinID:
XP_041123386
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All DBs
Position
13:17846257..17888815
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AA seq
328 aa
AA seq
DB search
MTQNIRAVVKGPGPWGFRLVGGKDFEQPLTISRVTPGSKAAQANLCVGDMITAIDGEKTE
HMTHLEAQNKIKGCVGEMVLTLNRSETKLWSPMVGDEGKTNPYKMNLSSEPQEVKLIGSA
HNRSAMPFSPGAAATSSSTGSKVVTNQYNNPAGLYSSESIQNFNSTLESKTSPPEPSKTI
ESQKPTVKLAIDTESEVYKMLQENQEPVEPPRQSASFKVLQEILETDGDVDKPSGFRSVR
APATKIGSTVGYIEKLPVCDQCGSGIVGMVVKLRDKFRHPECYTCAECGINLKQKGHFFV
EDKIYCEKHARERVIPPEGYDVVTVFPK
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaaacatacgagctgttgtgaaaggtccggggccatggggattcagactggtt
ggagggaaggatttcgagcagcctttaacgatttctcgggtaacccctggcagcaaggca
gcacaagctaacctgtgcgtaggagacatgataacggccatcgatggagaaaaaactgag
cacatgacccacttggaggcccagaacaagatcaagggctgtgtaggggagatggttctt
acactgaacaggtctgaaaccaaactatggtctcctatggtaggtgatgaaggaaagacc
aacccatacaagatgaacctatcatctgaaccacaggaggtgaagctcatagggagcgct
cacaaccggagtgctatgccgttttctcctggagctgccgccacctcttccagcaccggc
tccaaagtagtgacaaatcagtacaacaacccagcaggcctgtactccagtgagagcatt
cagaacttcaacagcacgctggagtccaagaccagcccaccggaaccaagcaaaaccata
gaatcccagaaaccaacagttaaactagcaatcgacaccgagtcagaggtttacaaaatg
ctgcaggagaatcaggagcctgtggagcctcccagacagtcagcctccttcaaagtcctg
caggagatcctggagactgatggggatgtggataagccatcgggattcagaagtgtaaga
gctcctgcaacaaagataggctccactgtcgggtatattgaaaagctgcccgtctgtgat
cagtgtggatcaggcattgtggggatggttgttaagctgagggacaagttccgtcaccct
gaatgctacacgtgtgctgagtgcggcattaacctgaagcagaagggacacttctttgtg
gaagacaagatctactgtgagaagcacgccagggagcgggtcatccccccggaggggtat
gacgtggtcactgtattcccaaaatag
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