Polyodon spathula (Mississippi paddlefish): 121325188
Help
Entry
121325188 CDS
T07273
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit-like isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
pspa04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121325188
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121325188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121325188
Transcription factors [BR:
pspa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
121325188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
121325188
NCBI-ProteinID:
XP_041123451
LinkDB
All DBs
Position
13:complement(7544534..7562521)
Genome browser
AA seq
901 aa
AA seq
DB search
MDDLMIDGDQLAYEDLSSYHFLPPISSIHVKAEPYLETANGPYLAIIEEPKQRGFRFRYE
CEGPSHGGLPGASSEKNKKTYPTVKIYNHVGYARVEVQLVTHSDPPRVHAHSLVGKQCSE
HGVCSVNVGPNDLTAQFNNLGILHVTKKGVNEVLTKRLKAERMRQRGDNAVITEQEEQEI
AEEARELGKVTDLNVVRLKFMAYLQDSNGGFTLALKPVISQPIYDSKSPNASNLKISRMD
KTSGSATGGDEIFLLCDKVQKDDIEVRFYEDDDNGWEAYGDFAPTDVHKQYAIVFKTPPY
RRNQIDRPVTVFLQLKRKKGGDASEPKQFTYHPQIQDKEEVQRKKMKPLPHYQDHYGRGG
AGGPPGGFGAGGAGGGGGFFPFPHSVNSSFSYNPMGGGYQGGTQMPGAAQRQASPASSGA
PQGGLSPQQQLIQIASLLQSKATLTARRTARALLDYASTGDARMLLAVQRQLCGVQDENG
DTPLHLAIIHQQASVVEKLVQVIVSIPDQRILNQSNHLRQTPLHLAVITKQYKIVDFLLK
AGADPTPLDRYGNSVLHLATPTSDEHMLRILLSHLKPHSRYLLNTPDYNGLYPLHLAVQR
SGEQCLRMLVDAGAEVNAVERKSGCTALHLAVQQDLFAVACLLITELNADVNVCSFGGNT
PLHLAASQGSPVLCSMLIAAGAERLVENDEPVYMSSASSSEEEREETQEEESRGRKRAEP
AETHTARLHSLASNPRKRPPTRGHTPLDLAKNQKVQDILEGKSRRPGKTPAKPKTAPHAG
AVCPLDSDTLARLSTALSAGEVQWKQLAEKLGMRTLADLYEECPSPCHSLLQGYQMSGGR
VESLIDALQALGLNEGVRVLREAELKDKTHTTEVKVDSGYDSQSTEQLEHEKMDESVPAN
S
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggacgatctaatgatagatggcgatcagctggcttatgaagatttatcctcatatcat
tttttaccaccaatctcaagcatacacgtcaaagcagagccgtacctggagacagctaac
ggtccctaccttgcaataatcgaagagccaaaacagagaggatttcgttttcgttacgag
tgcgagggtccctctcatggagggctgcccggggcgtccagtgaaaagaacaagaaaacc
taccccactgtaaagatctataaccacgtgggctatgccagggtggaggtgcagctggtg
acgcactcggacccgccccgcgtccatgcgcacagcctggtggggaagcagtgcagtgaa
cacggggtgtgcagcgttaacgtggggcccaacgatctcactgcacagttcaataacctg
ggtatcctgcacgtcacaaagaagggagtgaatgaagtgctgaccaagaggctgaaggcg
gagaggatgagacagagaggggacaatgcggtcatcactgagcaggaggagcaggagata
gcggaagaggctcgggagctgggcaaggtgacggacctgaacgtggtgaggttaaagttc
atggcgtacctgcaggacagcaacgggggattcaccctcgccctgaaacccgtcatctcc
cagcccatctacgatagcaagtctcccaacgcgtcgaacctgaagatctctcgcatggac
aagacgtcgggctcagcgacgggaggggacgagatcttcctgctctgtgacaaagtgcag
aaagatgatatcgaggtgcgcttctatgaggatgatgacaatggctgggaggcgtacggt
gacttcgcacccacagacgtgcacaagcagtacgccatcgtgttcaaaacccctccctac
aggaggaatcagatcgatcgccccgtcaccgtgttcctacagctaaaacgcaagaagggg
ggtgacgccagcgagcccaagcagtttacataccacccccagatacaagacaaggaggag
gttcagaggaagaagatgaagcccctccctcactaccaggaccactacgggcgaggcggg
gctgggggtccgccagggggcttcggagcagggggggcaggaggaggcggtggttttttc
ccctttccccattcagtgaactccagcttctcttacaaccccatgggggggggctaccaa
gggggcacccagatgcctggagcagcgcagcgacaggcctcccctgctagcagtggggcc
cctcaaggggggctgtccccacagcagcagctcatacagattgcctcgctcctccagtcc
aaggccacactgacggccagacgcacggcccgcgccctgctcgattacgccagcacggga
gacgcacgcatgctgttggctgtgcagagacagctgtgcggggtgcaggacgagaacggg
gacacccctctgcatctagccatcattcaccagcaggccagcgtggtggagaagctggtg
caggtcatcgtgagcatcccagaccagaggatcctgaaccagagcaaccacctgagacag
actcctttgcacctggctgtcatcacaaagcagtacaagatcgtggacttccttttgaag
gcaggggctgaccccacccccttggatcgctatggcaactcggtgctgcacctggccacg
cctaccagtgacgagcacatgctgcggatactgctgagtcacctgaaaccacacagccgc
tacctgctcaacacacctgactacaatggtctctacccccttcacctcgcggtgcaaagg
tccggtgagcagtgcttgcgaatgcttgttgatgccggcgcggaggtgaatgcagtggag
aggaagagtggctgtactgccctgcacctggctgtgcagcaggacctcttcgctgtggcc
tgcctactcatcacagagttgaacgctgatgtgaatgtctgctcgtttggtgggaacacc
cccctgcacctggctgccagtcagggctccccagtgctgtgctccatgctcatcgcagca
ggtgctgagaggttggtggagaatgatgagccagtctacatgtcctctgcatcctcatct
gaggaagagagggaggagacacaggaggaggagagcagggggagaaagagggcagagcca
gcagagacccacactgcacgtctgcacagcctggcctccaacccccgcaagagacccccc
acgcgaggacacacccccctagacctggccaagaaccagaaagtgcaggacatcctggag
gggaagtccagacgaccagggaagacccctgccaagccgaagaccgccccccatgcaggt
gctgtctgccccctggacagtgacaccctggcccggctcagcactgccctgagtgcgggg
gaggttcagtggaagcagctggcagagaagctgggcatgaggaccctggcagacctgtat
gaggaatgcccttccccttgccacagcctgctgcagggctaccagatgtcgggcggccgg
gtggagagcctgattgatgctctgcaggctctgggtctcaatgagggagtgagggtgctg
agggaggccgagctcaaggacaagacccacaccacagaggtgaaggtggacagtggctat
gacagtcagtcgacagagcagctagagcatgagaagatggacgagtctgttccagccaac
tcctga
DBGET
integrated database retrieval system
