Polyodon spathula (Mississippi paddlefish): 121325217
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Entry
121325217 CDS
T07273
Name
(RefSeq) cadherin-15-like isoform X1
KO
K06809
cadherin 15, M-cadherin
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121325217
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121325217
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Major cadherins
121325217
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Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_FAT4_N
Fibulin_C
RMI2
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
121325217
NCBI-ProteinID:
XP_041123526
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All DBs
Position
13:complement(37476065..37492859)
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AA seq
802 aa
AA seq
DB search
MWSKVFAMFLLLVAVFYQVGSTSVTEQQAEGDSAEVLFLWRQKIVGSSGLQRAKRAWVIP
PINIPENAKQIPKNIVQIKSDILEPGKVLYKIQGPGVDENPKGFFEINETTGWVILMNVL
DRETHSKFKIKAYALDLSGKPMEEPTELEIHVVDQNDNRPAFVQEEFTGRVHENSKPGTS
VMQVEATDADDIETENAALAYSIIGQESIPPFRINKTMFGIDELTGIISTRDVGLDREEV
DGFNITLQVADMSGSGMTSYSSALIYINDVNDNAPNFTSDTFHMSAMENKVQADVGRITV
TDEDEAQTENWWVKYTITAGDPEGNFDIRRDDATNEGIVSVVKPLDYESLNYYELVVMVE
NESPLSLMGPKTPPSSATVTINVLNQNEPPGFRQSPLRLSIPEGSPAGTLLASNIALDPD
RQALRYDVQHDPDQWLFLDDESGEITANKEITKNSRFLTEDVYMAIITVEDTGDYPSTAT
ATVYITVLEVNDFAPEPFPLSKFMCNDPEKGSGLVLSATDKDQPPHGAPFLFSLDDSEPE
NIRNWTLHRINDTHAALRLLSAVVEGDYVLPVLLSDSGMPALTEIHMVNVTVCHCNNEGS
CQPFLAAIFSAGVGLSLGALLIILGSIVLLLLLLLIMAAVEQCHRRPIRKGMLGISEDDI
RDNILNYDEQGGGEEDENAYNMDQLRNPNEIIPPPTAAMPRGKQPVRKDTPYNYPSPSYP
RKTPADPIDIEDFINNGLDAADKDPNVPPYDTALIYDFEGDGSLAGSLSSIASGSSDGDQ
DYDYLNSWGPRFNKLANLYDKH
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgtggtccaaggtgtttgccatgttccttttgctggtggccgttttctaccaggtaggc
agcacatctgtcacagaacaacaggcagagggggacagcgcagaggttctgtttctgtgg
cgacagaagatagtggggtctagtgggctacagagagccaagagagcctgggttattcca
ccaatcaacatccctgagaatgccaagcaaatcccaaagaatatagtccagatcaaatct
gacattcttgagcccgggaaggtgctgtataagatccaaggcccgggggtcgatgagaat
cccaaaggattttttgaaatcaatgaaacgaccgggtgggtcattctaatgaatgtgctt
gacagggaaacccacagtaagtttaagatcaaggcctacgccctggatttgagcgggaaa
cccatggaagagcccactgaactggagatccatgtggtggatcagaacgacaaccggccc
gccttcgtgcaagaggaatttactggacgtgttcatgaaaactctaaaccaggtacgtct
gtcatgcaggttgaggcaacggacgcggatgacattgagacagaaaacgcagccctggcg
tactccatcatcggccaggagagcatcccgccattccgaatcaataaaaccatgttcgga
atcgatgagctcactggcatcatctccaccagggatgtagggctggatcgagaggaggtg
gatgggtttaatatcacactccaggttgcggacatgtctggttctgggatgaccagctat
tcctcagcactgatctacatcaatgacgttaacgacaatgctcccaatttcacctctgac
acgttccacatgtcagcaatggagaacaaagtgcaggctgacgttggcagaatcactgtg
acagacgaagacgaagcgcaaacagagaactggtgggtgaagtacaccatcacagctggg
gatccggaggggaacttcgacatccgcagggatgatgcaaccaacgaaggcatagtgtct
gtggtgaagccgctggattatgagtctctgaattactatgagctggtggtgatggtggag
aacgagagtccgctgagcctcatgggtcccaagacccccccgagcagtgccactgtgacc
attaacgtgctgaaccagaacgagccccccggcttccggcagagtcccctgagacttagc
atccccgagggaagcccggccggcaccctgctagccagtaacatcgccttggaccctgac
aggcaggctctacgatacgatgtgcagcacgacccggaccagtggctgttcctggatgat
gagtctggggagatcacagccaacaaggaaattaccaagaattcccgcttcctcactgag
gacgtctacatggccatcatcacagtggaagacacaggagactaccccagcacagccact
gccacggtgtatatcacagtgttagaggtgaatgacttcgcccctgagccctttcctctg
agcaagttcatgtgcaatgacccagagaaaggttctggtttggttctgagtgctaccgac
aaagaccagccccctcacggagcaccctttctcttcagtttggatgacagtgagccagag
aatattcggaactggaccctccacagaatcaatgatactcatgcggcgctgcgtctgctc
tcggcagtggtggagggagactacgtgctcccggtgttgctcagtgactccggcatgcct
gccctcactgagatccacatggtcaacgtgacggtgtgccactgcaacaatgagggaagc
tgtcagcctttcttagctgccatcttcagcgctggagtggggctgagcctgggcgcgctc
ctcatcatcttgggcagcatcgtgctcctgctcttgctgttgttgatcatggctgcagtg
gaacagtgtcaccgaaggcccatcaggaaagggatgctgggaatttcagaagatgacatt
cgagacaacatcttgaactatgatgagcaagggggcggagaagaggacgagaatgcctac
aacatggaccagctgaggaaccccaatgagatcatcccaccccccaccgcggccatgcct
agagggaagcagccagtcaggaaagacacgccctacaattacccctccccctcgtatcca
cggaaaaccccggccgaccccattgatatcgaggacttcattaacaatggtctggatgca
gcagacaaggaccccaatgtgcccccgtatgacacagcgctgatctatgacttcgagggg
gacggctcgctggctggcagcctgagctccatcgcctcgggcagctctgacggagaccag
gactacgactatctcaacagctggggaccccgctttaacaaactggccaacctgtatgac
aagcactga
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