Polyodon spathula (Mississippi paddlefish): 121325269
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Entry
121325269 CDS
T07273
Name
(RefSeq) VPS10 domain-containing receptor SorCS1-like
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121325269
Membrane trafficking [BR:
pspa04131
]
Protein recycling
Others
Others
121325269
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
121325269
NCBI-ProteinID:
XP_041123628
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Position
13:2172152..2268000
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AA seq
1279 aa
AA seq
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MESGVGFCPSKNTALWSWLLISTSFYVIAKAEITCRSCQPQAAKPRPEELFWLMKTDTAE
TVTGFKREIIKYPDGTAGSHLAGYKTHLHDCVAETLSCVLGRGKKIRSFSRKNTGQQHFI
KLTRYGLPKNEDHNNVAAAAGEKVSSLTQPEQKKLAGSKRSLPVISNKASENHRFKRYSL
IKGKHGLKSITLQQEGESSDFGDREVRSASLAKQRLRRAELQWPGDEGKATDSRDKELKL
TSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLFDFNLGSVTESSLWRSTDYGTTYEKL
NDKVGLKTILSYLYVSPNNKRKIMLLTDPEIESSLLISTDEGATYQKYRLNFYILSLLFH
PKQEDWILAYSHDLKLYSSVEFGRRWQLIHERVAPNRFYWSVLGLDKESDLIHLETSVAE
GRAQYITCKLQNCTEANKGRPFPGYIDPNSLVVQDEYVFVQVTTGGRPVYYVSYRREGFA
QMKLPKYTLPKDMHVISADENRVVAAVQEWNQNNTYNLYVSEARGVFFTLALESMVISRE
AEGNIMIDLYEVAGINGMFLANKQLGKQVKTYITYNKGRDWRLLQAPVTDARGNDISCLL
PYCSLHLHLQVSDNPYASGNIASKESAPGIIVASGSIGSELSLSNVSMFITSDAGNTWRQ
IFQEEYSVLYLDQGGALVAIKHTPLPIRHLWLSFDEGRVWNKYSFTSVPLFVDGVLGEPG
DETLIMTIFGHVSHRSEWQLVKIDFRSIFNRRCTEEEYQTWHLHNQGDPCIMGMKRIYRK
LKPTARCVMGRDTPFTMMSEPCLCTEADFECDYGYERHGDGKCLPAFWFNPSSMSRSCST
GNSFLNSTGYRKVVSNNCTAGVKEIYTARKQLCPHRAPRGLHVVTSNGTLTATTGNNVTF
LVFLEEGDSSRTSITLDFGDGNAVSYSNLSSIEDGIKHVYKHVGIFKVTAIGENSLGSDS
AVLYLHVTCHLDRIHLSAPFVAVKNKEINLTAVLWPNQVGTVTYIWWFENNTEPVITLEA
SISFTFMREGINTVTVQVSARNEILQDKKTIAVHEHFRSQLLAFSSNLDEYNPDVAEWRQ
DVSKVVKNSLVQATGIAEEQLLVTVLPGLPTAAEFFLLPDKELTEGRAERNTAHLDQLSE
ILLRALNQNIVQFTLRAGVHVSVYAAHLSAAPLVDTAEGHSGSAMLMLLSVVFVGLAVFI
IYKFKRKIPGINVYAQMQNEKEQEMISPVSPIDSTPINQQRELGISLDLLDKELDTGVIG
CIRSHSNRISQDIPIYVNV
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggagagcggggttggtttctgtccatccaagaacactgctctctggagctggcttctg
atctccacttctttctatgttattgctaaggcagagataacttgcagatcgtgtcagccc
caggcggccaaaccgcgtccagaggaattgttttggctaatgaagacagacactgccgaa
actgttactggatttaaaagggagattataaagtaccctgacgggacagccgggtctcat
cttgcgggctacaaaacgcatcttcatgactgcgttgcagaaacgttgagctgtgttttg
gggagaggcaaaaagataaggtcatttagtagaaagaacacagggcagcaacactttatc
aaactgactcgctatggactgccaaaaaacgaggatcacaataatgtggctgctgctgct
ggcgagaaagtttccagccttacacagcctgagcagaagaaactcgccggcagtaaacgt
tctttgcctgtcatcagcaacaaagcgagtgagaaccatcggttcaaaaggtatagtctg
attaaggggaaacatgggctgaaatcaatcactttgcagcaggagggagaatcaagtgat
tttggagacagggaagtgcgcagcgcttcgcttgctaagcagagactgagacgcgctgaa
ctgcaatggcccggcgatgaagggaaagcgactgactccagggacaaagagttgaaactt
accagcaccacctttgcactgacaggggattctgctcataaccaagccatggtgcactgg
tcaggacacaacagcagtgtgattctcatccttacaaagctgtttgacttcaacctggga
agtgtcacagagagctctttgtggaggtcaactgactatggaaccacttatgaaaaactt
aatgacaaagtgggactgaagaccattttgagctacttgtatgtcagccctaacaacaag
agaaagataatgctgctgactgacccggagatcgaaagcagcttgctcatcagcacagac
gaaggggccacctatcagaagtatcgactgaacttctacattctgagcctactgtttcat
cccaagcaggaagactggatcctggcttacagccacgacctaaagttgtacagctctgtg
gaatttgggaggagatggcaattgattcatgaaagagtagccccaaacagattctactgg
tctgtattgggtttagataaggagtctgatctcattcacctcgagacaagtgttgcagaa
ggacgcgctcaatatatcacctgcaagcttcaaaactgtaccgaggccaacaaaggcagg
ccatttccaggatatattgaccccaattccctggttgttcaggatgagtatgtgtttgtt
caggtgactactggaggcaggccagtttattatgtgtcttataggagagaaggctttgca
cagatgaagctaccaaagtacactttgccaaaggacatgcatgttatcagtgcggatgag
aaccgtgtggtagccgctgtacaggagtggaatcagaataatacctataacctgtatgtg
tcagaggctcgaggtgtcttcttcactctggccctggagagtatggtgatcagcagagaa
gctgaggggaacatcatgattgacctctatgaggtagcagggataaacggaatgttcttg
gcgaacaagcagcttgggaagcaagtgaagacctacatcacatacaataaaggaagggac
tggcgtttgctgcaggctcctgtcacagacgcgagggggaatgacatcagctgcctgctg
ccatactgttccctgcacctgcacttacaggtatctgacaatccctatgcttcaggaaat
attgccagcaaagaatcagcacccggaattatagtggcttcaggttccataggttctgag
ctgtcactcagcaatgtgagcatgtttataacttctgatgctggaaacacctggagacag
atttttcaggaagagtacagtgttctttacctggatcagggtggtgctctagtagctatt
aaacacacaccccttccaatacgccatctttggttgagtttcgatgaaggcagggtatgg
aataagtacagtttcacatcagtccctctgtttgtggacggggtgctgggagaacctgga
gatgaaactttaataatgacaatatttggacatgtcagccatcgatctgagtggcagctt
gtcaaaattgactttcgatccatcttcaatagaaggtgcacagaggaggagtatcagacc
tggcatctacacaaccagggtgatccgtgtatcatgggaatgaaaagaatttacaggaaa
ctaaaaccaactgcccggtgtgtgatgggaagagacacaccttttacaatgatgtctgaa
ccctgcctctgcactgaagctgactttgagtgtgattatggatatgagcggcacggtgat
gggaagtgtttgccagccttctggttcaatccatcctcaatgtcgagaagctgcagcact
ggaaacagttttctcaacagcactgggtaccggaaggtggtgtccaataactgcactgca
ggagtgaaggagatctacacagccaggaagcagctgtgccctcaccgcgctccccggggc
ctccatgttgtcactagcaatggcacgctgacagccacaacagggaacaatgttaccttc
ctcgtctttctggaagagggagacagctctcgaacgagtattacgttggattttggagat
ggcaatgctgtgtcctactccaacttgagttccattgaggatggaatcaaacacgtttac
aaacatgtggggatttttaaagtgactgctattggagaaaacagcctgggatcagacagt
gctgtcctctacttgcatgttacatgtcatctggatcgcatccacctctctgcccctttt
gtagctgtaaagaataaagagatcaatctaacagcggtcttgtggccaaatcaagtgggc
actgtcacatacatctggtggttcgagaataacactgagccagtaataaccctggaggca
agcatctcctttacattcatgagggaaggaataaacactgtgacagtgcaagtctctgct
cggaatgaaatactgcaagacaaaaagaccattgccgtgcatgagcacttcaggtctcaa
ctgctggcattttcttctaatctggatgaatacaaccctgatgttgctgaatggaggcag
gacgtcagcaaggtcgtcaagaattcattggtccaagctacaggtatagcagaggagcag
ctcctggttacagtcctgccaggtcttccaacggctgcagaattcttccttttaccagat
aaagagttaacagaggggagagcagagaggaatacagcacacctagaccagctttcagag
attctgctcagagccctcaaccaaaacatagtgcagttcactctgcgggcaggtgttcac
gtctctgtgtacgctgctcatttatcagcagctcctcttgtggataccgctgaagggcac
agcggctcagccatgctgatgttgctatcagttgtatttgtgggactagccgtctttatc
atttacaaatttaaaaggaagatcccaggcatcaatgtctatgcgcagatgcagaacgaa
aaagaacaggaaatgattagtccagtgagtcccattgacagcactccaattaaccagcaa
agggaattggggatttcattggatctactggacaaggaattagacacaggggtaatagga
tgcattcgttcacattctaacaggatctcacaggatatccccatatacgttaatgtttga
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