Polyodon spathula (Mississippi paddlefish): 121325275
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Entry
121325275 CDS
T07273
Symbol
pcdh18a
Name
(RefSeq) protocadherin-18a isoform X1
KO
K16499
protocadherin delta 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121325275 (pcdh18a)
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Protocadherins
121325275 (pcdh18a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Syndecan
TMEM154
Cadherin_C_2
PepSY
Motif
Other DBs
NCBI-GeneID:
121325275
NCBI-ProteinID:
XP_041123642
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All DBs
Position
1:99122606..99128837
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AA seq
1136 aa
AA seq
DB search
MCSKKGNVYLCLFFVNALLVVILLTQDVAGKTLKYKVYEEQRVGTVIARLKEDVVDVLSK
LPSPFSVRFRAMQRGSTPLLSVREEDGEISIGAKIDRELLCQKNLNCTIEFDVITLPTEH
LQLFHVEVEVLDINDNSPQFSRSVIPIEISESAAVGTRIPLDSATDPDVAENSLHTYSLS
QNDFFDIEVRTRTDGAKYAELIVVRELDREIQSSYELQLLASDTGVPPRSGSSLLKISIS
DSNDNSPVFEEQSYVIHLQENSPVGSLLLDLNATDPDEGANGKVVYSFSSHVSPKILETF
KINTENGYLTLLKPLNFEVTKTYEIDAQAQDMGPNSIPAHCKIIIKVVDINDNKPEISIN
LMTQGKEEVAYISEGAAKDTFVALVRVQDKDFGLNGEVVCKLHGHGHFKLQKTYENNYMI
LTNATLDREKRSEYSLTVIAEDKGIPSLSTIKHFTVQVLDENDNPPRFQKNRYEIFMSEN
NPPGAYITSVLASDPDLGENGHVTYTILESFILGSSITTYVTIDPSNGAIYALRTFDHED
INRIAFVIQARDGGSHQLSSNTTVVLTIIDENDNAPAIVMPALHNHTAEISIPKYAELGY
LVTAIRATDRDSGINSELSCFIINGNEDNIFTIDPKKCEIYTNVTMEDFPHQEIEIVVVV
QDKGSPQLNTKATFKYILYESLDILFQPTPTASDQPTLDVSMIIIISLGAICAVLLVIMV
IFATRCNREKKDTRSYNCRVAESTYQNHPKKPSRQIHKGDITLVPTVNGTLPIRSHHRSP
SSSPTMERGQMSSRQSHHSRQSLNSLVTISSNHIPENFSLELAHTTQPVEQVSQLLSMLH
QGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGE
GFSDLFLTDGHHRLHPAMKFCTDECRVLGHSDQCWMPPLPSPASSDYRSNMFIPGEDPQQ
PPVEEDSQSTDSNDRKKSFSTFGKDSNSSNEETGDLCSTSLLSEMNSVFQRLLPPSLDSY
TECNEAERMSSLERKKGHLPGKSLAYPQGVAAWAANTHFQNPGNSTGPIQVNHVSAQPPS
KWLPAMEEIPENYEEDDFDNVLNQLHVSRSDSRHEIMDASELVAEINKLLQDVRQS
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagcaaaaaaggaaacgtatatttgtgtttattttttgtgaatgcactgctggtg
gttattctgttaacccaggatgttgcaggtaagactttaaaatataaagtatacgaggaa
cagagagtggggactgtgattgctagattaaaggaagatgtggttgacgtattatctaaa
ctgcctagccccttttcggtccgttttcgagcaatgcagagagggagcacccctttgctc
tctgtccgggaggaagacggggagatcagcattggggcgaaaattgaccgtgaattgctc
tgccagaaaaacctcaattgtacaatcgaatttgacgtgattacactgccaacagaacac
ttgcagttattccacgttgaagtcgaggttctcgacattaatgacaattccccccagttc
tccaggtccgttattcctattgaaatctctgaaagtgccgctgtgggaacacggatcccc
ttggacagcgctactgacccagatgttgctgaaaactcccttcacacttattccttgtct
caaaatgatttttttgatattgaagtgagaaccaggactgatggggccaagtatgcagaa
cttattgtggttagagaactggacagggagattcagtcaagctatgaactccagctattg
gcctctgacactggtgtacctcccagatctggctcttctcttcttaaaatcagcatttct
gattcaaatgataacagtcctgtttttgaagagcaatcatatgttatccatctacaagaa
aactcccctgtgggatctttgctgctagatctcaatgccacagatccagatgagggcgct
aatgggaaagtagtgtattctttcagtagccacgtgtctcctaaaattttggagacattt
aagatcaacacggagaatggctaccttactcttcttaagccactcaactttgaagtcacc
aagacctatgagattgatgcccaggctcaagacatgggaccaaactcaatcccagctcac
tgcaagattatcataaaagttgtagacatcaatgataacaaacctgaaatcagcatcaac
ttaatgacccaggggaaagaggaagtggcctatatttctgaaggggcggccaaagacact
tttgtggctttggtaagggttcaagacaaggactttggtttgaatggggaagttgtctgc
aagctacatggacatggtcactttaagcttcaaaagacctatgaaaacaactacatgatc
ctgaccaatgctacattagacagagaaaagagatctgaatacagtctgactgtcattgca
gaagacaaagggatccccagtctttctacaatcaaacactttacagtccaggtgctggat
gaaaatgacaatccaccccgttttcagaaaaacaggtatgagatcttcatgtctgaaaac
aatccccctggagcctatatcacatcagtgttggccagtgaccccgatcttggggaaaat
ggacatgttacctacacaattctggaaagctttattttggggagctccattaccacctat
gtaaccattgacccttctaatggggctatttacgctctcagaacatttgatcatgaagac
atcaacagaattgcttttgttattcaagcaagagatggaggtagccaccagcttagcagc
aacaccacagtggttctcacaataatagatgaaaatgacaatgcaccagctattgtcatg
ccagcactgcacaaccatactgctgaaatctccatccctaaatatgctgagcttggatac
ctagtcacggccattagggccactgacagggattctggtattaattcggaactgagttgc
tttattataaatggcaatgaagataacatcttcaccatagacccaaagaagtgtgagatc
tataccaatgttactatggaagactttccccaccaagaaattgaaattgtagtagtggtt
caagataagggaagcccacagcttaatactaaagcaacttttaagtatattttgtatgaa
agcctggatattcttttccaacccacaccaacagccagtgaccagcctactcttgatgtc
tctatgattatcattatttcgttaggagccatttgtgcagtcctcttagtcataatggtg
attttcgctaccagatgcaacagagaaaagaaagatacaagatcatataactgcagggtg
gctgaatccacttatcaaaatcatcccaagaaaccatcaaggcagatacacaaaggagac
atcactctggtgccaactgttaatggcacactgcccataagatctcatcacaggtcaccc
tcatcatcaccaactatggagagaggccagatgagcagcagacagagccatcacagtcgc
caatcattgaacagcttggtcaccatctcgtccaatcacataccagagaatttctcactg
gaactcgcacacaccacccaaccagttgagcaagtctcacagcttctgtccatgcttcat
cagggccagtaccagccaagaccaagtttccgtgggaataaatattcaagaagctacaga
tatgcccttcaagacatggacaagttcagtcttaaggacagtggtcggggagacagtgag
gctggggacagtgattatgatctaggcagagactctccaattgacagacttcttggtgaa
ggattcagtgaccttttcctgacagatggccatcacagacttcatccagctatgaagttc
tgcacagatgaatgcagggtgctcgggcactcagaccagtgctggatgccaccgttgccc
tctcctgcttcatctgactacagaagtaacatgtttatacctggggaggaccctcagcag
cctcctgtagaagaggacagccagtccacagattctaatgacagaaagaagagcttttcc
acttttggcaaagactcaaatagcagcaacgaggagacaggagacctttgcagcacctct
ctcctttcagaaatgaacagcgtcttccagcgcttactgcctccgtcattggactcttac
acagagtgcaacgaggcggagagaatgagctccctggagcgcaaaaaagggcatttgcct
gggaaatctttagcctaccctcaaggggtggcagcctgggcagctaacactcactttcaa
aatccaggaaacagtacagggccgattcaagtgaatcacgtgagtgcacagcccccctcc
aagtggctaccagccatggaggaaatcccagagaactatgaagaggacgattttgacaac
gtcttgaaccagctccacgtgagcaggagtgacagtagacatgaaataatggatgccagt
gagttagttgccgaaattaacaaacttttacaagatgttcgtcagagctag
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