Polyodon spathula (Mississippi paddlefish): 121325278
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Entry
121325278 CDS
T07273
Name
(RefSeq) low-density lipoprotein receptor-related protein 3-like
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121325278
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121325278
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
CUB
Motif
Other DBs
NCBI-GeneID:
121325278
NCBI-ProteinID:
XP_041123646
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Position
13:complement(32858090..32896319)
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AA seq
862 aa
AA seq
DB search
MSVVYDTLQHGESGKCFYPQDDKIIFWEFRMMEKAGTSPSLRLKWTFRQIALISFAGFFI
VRRTESTAITMAACNGKLEQHTERRGVLYSPSWPLSYPAGLNCSWYIQGDHGDVITISFR
NFDVEESRKCASDWLLMGPASKREYRVCGSVIPPPFISTRDHVWVFFHSDNAGSGKAQGF
RLSYIRGKLGQSSCQTGEFLCGNGKCIPSAWKCNTMDECGDDTDEKSCAAPPTESQTTMC
PSGTFQCTGVHSTQCLSNSLRCNSNKDCRDGSDEEDCPDTSCGKRLGNFYGSFASPDFFR
RNHSGSDLRCTWYMDTQDPRHIILQLDLQLGYSDYIQVYDGMGERSDKLLQTLSYHNNRR
SASVESSRGQLTVLYHAKPKSAGHGFNATYQVKGYCFPWEHPCGSDEGCFADHQRCDGWW
HCPNGKDEENCPACQKGEYPCEGNSGVCYAGPDRCNNQKNCPDSSDEKNCFTCQLGNFHC
GTNLCIFETWRCDGQEDCQDGSDEHNCLVAVPRKVITAALIGSLICGLLLVIALGCAFKL
YSLRTREYRAFETQMTRLEAEFVRREAPPSYGQLIAQGLIPPVEDFPVYNPSQASVLQNI
RTAMRRQIRQHSSRRASSRRRLGWLWSWLFQHGARVRGQIPLLTPPSTSHTSLSQGIHRY
QAVGGSGGHTPSSTPRGLDLEAESVAPCQRGAFHRDHQPPEHSPVDHSPQSSTDEAGDQT
RGEEVSRDFCAGAAGFQSDPLSDRIEAPNTGSGNSNRHEGSAPTRNSSSYKRKLSRKEVQ
GLAANLRGVALRRCSHPRSVPSALDQPFQSRARHSDLKQEELTGSQSVSQRCHSVEVPIQ
ETAVLFCSSQHASDDDESLLVC
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtagtgtacgacacattacaacacggggaaagcggcaaatgcttttatcctcag
gatgacaaaataatcttctgggaatttcgaatgatggagaaggctggaacctcgccgagt
cttcgtttaaaatggacatttcgtcaaatagctctgatttcctttgctggtttcttcatt
gttcggagaaccgaatctactgcaataacaatggctgcctgcaatgggaagctggaacag
cacacagaaaggcgtggagtcctttacagcccgtcctggcctctgagctacccagcgggg
ctgaactgcagctggtatatccagggggaccacggggatgtcatcactatcagtttcagg
aactttgatgtagaagagtctcggaaatgtgcttcagactggctcctgatgggcccagct
tcgaagagagagtacagggtgtgcggctctgtcatccccccgcccttcatctccacacgg
gaccacgtctgggtgttctttcactccgacaacgccggctctgggaaggctcagggattc
agactctcctatatcagaggtaaactaggccaaagcagctgccagactggtgaattcctt
tgcgggaacggcaagtgcattcccagtgcctggaagtgcaacacgatggacgagtgcggg
gacgacaccgacgaaaagagctgcgcagcccctccgaccgagtcccaaaccaccatgtgt
ccctcggggaccttccagtgcactggagtccactccacccagtgcttatccaacagcctg
cgctgcaactccaacaaagactgcagggacggctcggacgaggaggactgccctgacacg
tcctgcgggaagcggctggggaacttctatggctccttcgcctccccagacttcttccgg
cgcaaccacagtggatcagacctgcgctgcacctggtacatggatacgcaggacccgcgg
cacatcatcctccagcttgacctgcagctgggctacagcgactacatccaggtgtacgat
ggcatgggagaacgcagcgacaagctgctgcagactctgtcctatcacaacaatcgccgt
tcagccagcgtagagtcctccagggggcagctcacggtcctgtaccatgccaagcccaag
agcgcgggccacggcttcaatgccacctaccaggtcaaaggctactgcttcccctgggag
cacccttgtggcagcgatgagggctgcttcgccgatcaccagcgctgtgatggctggtgg
cactgccccaacggcaaggacgaagagaactgccccgcttgccaaaagggcgagtacccc
tgcgagggcaacagtggggtgtgctacgcgggcccggaccgctgcaacaaccagaagaac
tgccccgacagctcggacgagaagaactgcttcacctgccagctgggcaacttccactgc
ggcaccaacctgtgcatcttcgagacgtggcgctgcgatgggcaggaggactgccaagac
ggcagcgacgagcacaactgcctggtagcggtgcccaggaaggtgatcaccgcagcactc
attggcagcctcatctgtgggctgctgctggtcatcgccctggggtgcgcctttaaacta
tactccctgagaaccagagaatacagggctttcgaaacccagatgacccgactggaggcg
gagtttgtgagaagagaggcccctccctcctatggtcagctgattgctcaaggccttata
ccccctgttgaggactttcctgtttataatccatcccaggcctcagtcttgcagaacatc
aggacggcgatgcgacggcagatccgacagcactcctcacggagagcttcctcccggagg
agactggggtggctttggagctggctattccaacacggggctcgggttcgggggcagatt
ccactgctgactccccccagtacctcccacacctccctcagccagggcatccacaggtac
caggcggtgggggggagcggcggacacactccctcctccacaccccggggactggacctg
gaggcagagtctgtggccccgtgccagcgtggggctttccacagggaccaccagccccca
gaacattcccctgtggatcactcccctcagtccagcacagacgaggctggggaccagact
cgtggggaggaggtaagtcgtgacttctgtgcaggggcagccggattccaaagcgatcct
ttgtctgatcgtatagaagcccctaatacgggtagcggcaactcaaacagacatgaagga
tcagcgcccacgaggaacagtagctcctacaaacgaaagctgtctcggaaagaggtgcag
ggtctagctgctaacctccgcggtgtggcgctgcgtcgatgctctcaccccaggagtgtg
ccctctgctctggaccaacccttccaaagccgtgcccgccactcagacctcaagcaggag
gagctcacgggaagtcagagtgtaagtcagaggtgccactctgtggaagtgccaatacaa
gaaactgctgtgctgttctgctccagccagcatgccagcgacgatgatgagtcccttctc
gtctgctga
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