Polyodon spathula (Mississippi paddlefish): 121325309
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Entry
121325309 CDS
T07273
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121325309 (tdrd12)
Enzymes [BR:
pspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
121325309 (tdrd12)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121325309 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Helicase_C
SHQ1-like_CS
Motif
Other DBs
NCBI-GeneID:
121325309
NCBI-ProteinID:
XP_041123677
LinkDB
All DBs
Position
13:complement(33133246..33161167)
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AA seq
1387 aa
AA seq
DB search
MLKISILKIEDPGCFWGRILKGFGVLSESPEEYQKLHDQMNLFYHEVHQDIDKIKPASLE
QGQICIVYSIELKSWCRAFVESLFLSTDGYHAMCFLVDKAERVVVKADDVRAPVEKFMSL
PYWAKKFRLSGVQPVTLLVDICNEKAGLIPATRWDSAAIQYFINIVQGSTLTEAMLRIIE
GDSFGVELYLTINNEKICVNDDLVIKKFACYLSSTEKNKASTQQSEDDDNFEPEMSPCQL
SLPTMDLHKESRSPAEILWPGFMQGSTLKQVSVRREHVNPVVVKQDKDPAVPEIPVQVEM
CPVIERKTIKSDPQDEYRRTIENLTEKSKIMDLSSPNCNLRSELVVKELDTQNGYKENME
NITEDADQIDLKRSASKNLESDETALREECTCDRNINASKDIDEELAKARLLQFLNPDPL
NSGSEPLMHTQGILESRSGVFLHSVTRISPCTSLDTAPITDNLKKALIRHKYQGPNLPEA
YCWPAIARGCDTVLISHSGKDPLSYIPPFLTFLQLSSVYSSLLSRTGPIAVVLCPGWQKA
QYVFDTLEEYKLFQPLNPMLILVGLGKEEAKNVKILKGCQIIVTTPKSLVRLLAHHCFLF
LRLCHLVFDEVDVLFSRASEQMSAILEHFKKAATSEERVSLPQQIIAVGDRWNKQIRDLV
KEYMSDPCVVITIMEEAALYGNVHQVILVCLDCEKISVLLSALDFTPDIFQKTLIFTDSA
KEADHVFKAVSNTSAFCLKVHEGLTYRFDFVMEQWRKEIGFGTHIILVLTNDCMKALGIT
DATCIVHFSFPSTPKMFGSRLCSMSENFRNLVEQNTLEQEFSNAKSVLLLSEKNAGHVTG
VLRYFEHADVKLPPELTHFAEGVLMAKEEQKSGRPLCKYLKCFGFCSTPAPTRERQVPDQ
STGIAGACDSRICSDRHFVRPEQETQPHPSCGTISVLPLYVVNASCYFGRIVSKKEDLYS
SLAADMAEYYACNLQGVKEITKGGLYGIKEGTVYHRVQALDIPEKGDCLFYSISVRFIDE
GRAGEVREHQLLCLPSEFQSLPPQAVEFIVCRVKPIDNEIEWNPKVSRHINQKIKGVQHE
AKIVLRLGNTIWVDPMIRVTKLANLRTYINEYNIRSEIIGTGMGTDNPEHVALLRQLCLR
EGLGQVVETQQEINLESSTASSVQNTVNSSDELAAVSSDDCNSTPSEGKDSNQQESLSVS
YLSSDHEDVSLGNCVPALANPFPVKITGDLKPTSKIREAVLHKNRLHPEVQWFQKEDSVI
INIKIQNPHAHECEFFSDRVTFSALVDDKLYCADLELHDRILEDKSTCAIKCNEPVITLI
KEKKGVWQRLLQHKNTCVTLDFDHFDDLEEEEEVMFCNGGDTTAKYASSLPDEEGCYVYS
DGESDSD
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaatttccattttaaagattgaagaccccggttgtttttggggtcgaatactc
aaaggattcggtgttctttctgaaagcccggaagagtaccagaaattgcatgaccaaatg
aacctcttctaccacgaagttcatcaggatattgataaaataaagccagcatctttggaa
caaggacagatttgcattgtgtattccattgagctgaaaagctggtgcagggcctttgtg
gaatctctgtttttaagcaccgatgggtatcatgctatgtgttttcttgtcgataaagca
gaacgcgttgtagtgaaagcagatgatgtccgagcacctgttgaaaagtttatgagtctt
ccatactgggcaaaaaagttcagactcagtggtgtacagccagtaacattgcttgttgac
atctgcaatgaaaaagcaggattgatacctgccacaaggtgggacagtgctgctatccag
tatttcattaatattgtacaaggctccaccttgacagaggcaatgctacgcattattgaa
ggggattcttttggtgttgagctctacttgactatcaacaatgaaaagatttgtgttaat
gatgacttggttataaagaagtttgcgtgctatttatcatcaactgaaaaaaataaagca
agcactcagcaaagtgaagatgatgataattttgaaccagagatgtccccttgtcaactc
tcccttccaacaatggatctgcacaaagaaagcagaagccctgctgaaatactatggcct
ggcttcatgcaagggtcaacacttaaacaagtttctgtgcggagagaacatgtaaatcca
gtggtggtgaagcaagacaaggacccggcagtgccagaaatacctgtgcaagtggagatg
tgtcctgtaattgaacgaaagaccattaaatctgacccacaggatgaatacaggagaacc
atagaaaacctcacagaaaagtcaaaaatcatggatttgagtagtccaaattgtaacctc
agaagtgaactagtggtaaaggagttggatacacagaatggatacaaggagaatatggag
aacatcactgaagatgctgaccagatagatttaaaaaggtcagcttctaagaatctagaa
agtgatgaaactgcattgcgtgaagaatgtacttgtgatcggaacattaatgcatcaaag
gatattgatgaagaacttgcgaaggctagattactccagtttctaaatcctgatcctctg
aattctggaagtgaaccattgatgcatacgcagggaattcttgaaagtagaagtggagta
tttcttcattcagtcaccaggattagtccttgtacttccttggatacggcccccattact
gacaatctgaaaaaggcacttataaggcacaaataccaaggaccaaatcttcctgaagct
tactgctggcctgcaatagcacggggttgtgacactgtgctcatatcccacagtggaaag
gatccactctcctacattcctccatttcttacattcctgcagctgtcttcagtttacagt
tcgctgctttcaaggactgggccgattgcagtggttttgtgtccaggatggcaaaaagcg
cagtatgtgtttgacactctggaagaatataagcttttccagccactaaaccccatgtta
atattagtggggttgggtaaggaagaagccaaaaacgtcaaaattctaaaaggatgtcag
ataatagtgactacaccgaagagccttgttagattgcttgcacaccattgcttccttttt
cttcgactctgtcaccttgtttttgatgaagttgatgtgttgttttctagagccagtgaa
cagatgtctgctatattggagcattttaaaaaagcagctacttctgaagaaagggtgtct
ttgccacagcagatcatcgctgtgggtgatcggtggaacaaacagatcagagaccttgtt
aaagagtatatgagtgacccttgtgtggtgattacaatcatggaggaggcagcgctgtac
ggaaatgtgcatcaggtgatcctagtttgcctggactgtgaaaagatttccgtattgctc
agtgcgttagacttcacccctgatattttccagaagactttgatcttcacggactcggca
aaagaagcagaccatgtgtttaaggctgtaagcaacacttcagcattctgcttgaaagtt
cacgagggcctgacctatcggtttgattttgtcatggagcagtggaggaaagaaataggt
tttggtacacacatcattctggttttgaccaatgactgcatgaaagctttgggaattaca
gatgccacttgcatagtgcacttcagtttccccagcactcccaaaatgtttggatcccgt
ctatgtagcatgtctgagaactttcgaaacttagttgaacagaacactttggaacaggaa
ttctcgaacgcgaaatctgtattgctgctttcagagaagaatgctggtcatgttacaggg
gtgctgcgatattttgaacatgctgacgtcaaactgccacctgaactaactcattttgca
gagggggttttgatggcgaaagaggaacaaaaatctggaagaccactttgcaaatacctt
aaatgctttggtttctgcagcacccctgcgcccactcgggagcggcaggtgcctgaccag
tctacagggatcgctggggcatgtgacagcagaatttgttctgaccgacacttcgtgcgc
ccagagcaagagacacagccccacccatcatgtggaactatatcagttttgcctttatat
gttgtgaatgcatcctgctactttggtcgcattgtcagtaaaaaggaggacctgtatagc
agtcttgctgctgacatggctgaatactatgcatgcaacctgcagggcgtgaaagagatc
acaaagggtgggctgtatggaataaaagaggggactgtctaccacagggtgcaggcgttg
gacattcctgagaaaggagattgtctcttctacagtatcagtgtgaggttcatagacgaa
ggcagagcaggggaggtgcgagagcatcagctgctttgcttgcccagtgagtttcagagt
ctgcctccacaggctgtggaattcatagtctgtagagtgaaacctatagataatgaaata
gaatggaacccaaaggtcagtagacacattaatcaaaaaattaaaggtgtacagcatgaa
gcaaagattgttctccgcctaggaaatacaatttgggttgatccaatgatacgggtaacc
aaactagcaaacttgagaacctacataaatgaatacaacatccgctcggagatcataggc
acaggcatgggcacagacaaccctgagcatgtcgcattgctcagacagctgtgtctgaga
gaggggttgggtcaagtggtggagacccaacaggaaattaatttggagagcagcacagcc
agttcagtgcagaacaccgtcaacagcagtgatgagcttgctgcggtttcatcagatgat
tgtaactccaccccaagtgaaggaaaagacagtaatcaacaggaatccctttctgtttct
tacctctccagtgatcatgaagatgtctctcttggaaactgtgtgcctgctcttgcaaac
cctttcccagtgaaaataacaggtgatctcaaaccaacaagcaagattcgtgaagcagtt
ctgcacaaaaaccgtcttcacccagaagtccaatggtttcagaaagaggattctgttatc
attaacatcaagatccaaaaccctcatgcacacgagtgtgaatttttcagtgacagggtg
acatttagtgctcttgttgatgataagctttactgcgctgacctggaactgcatgacaga
atcttagaagacaaaagcacctgtgctattaaatgcaacgagccagtaatcaccctaatc
aaagagaagaaaggagtctggcagaggctgcttcagcacaagaacacttgtgttactcta
gactttgaccactttgatgatttggaagaggaggaggaagttatgttttgtaatggtggg
gatactacagccaaatatgcctcatcattgccagatgaagaaggctgttatgtctactct
gatggcgagagtgacagtgattga
DBGET
integrated database retrieval system
