Polyodon spathula (Mississippi paddlefish): 121325417
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Entry
121325417 CDS
T07273
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121325417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121325417
03041 Spliceosome [BR:
pspa03041
]
121325417
03036 Chromosome and associated proteins [BR:
pspa03036
]
121325417
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
121325417
Spliceosome [BR:
pspa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
121325417
Complex B
121325417
Complex C
U2 SnRNP specific factors
121325417
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
121325417
TFTC complex
121325417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
121325417
NCBI-ProteinID:
XP_041123808
LinkDB
All DBs
Position
13:complement(44629584..44645461)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGALEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEETDNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATSMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLANEDT
PQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGEKGSI
GFLYLNIGLQNGVLLRTVLDPITGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLINPIQGATLDLVQLEQNEAAFSVTVCKFANGG
EDWYVLVGVARDLILNPRSVGGGFIYTYRLVSGGEKLEFMHKTPVEDVPSAIAPFQGRVL
ISIGKLLRIYDLGKKKLLRKCENKHVPNLITGIYPMGHRVVVTDVQESLFWIRYKRNENQ
LIIFADDTHPRWLTTACLLDYDTMASADKFGNISIVRLPPNTNDDVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEYPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPNKQKSVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctacaacctgacccttcaaagagccaccggcatcagtcatgctatccatgga
aacttctcagggacaaagcagcaagaaatcgtcgtttccagggggaagatcctggagttg
cttcgcccagatgccaacactggcaaggtgcacactctgctcaccatggaggtgtttgga
attatccgctccctcatggctttcaggctgacgggcgggaccaaagactatattgtggtg
ggcagcgactcggggagaatcgtcatcctggagtaccagccctccaagaacgtgtttgag
aaggtgcaccaggagaccttcggcaagagcggctgtcgacgtatcgtcccgggccagttc
ctggctgtcgaccccaagggcagggctgtcatgatcggagcgcttgagaagcagaagctg
gtgtatattctgaacagagatgctgctgctcgcctcaccatctcctcccctctggaggca
cacaaggccaacaccctggtctaccacgtggtgggggtggacgtgggatttgagaaccct
atgtttgcatgcctggagatggactacgaggagacagataatgacccgacaggggaggct
gccgctaacacccagcagaccctgaccttctatgagctggacctgggcttgaaccacgtg
gtgcgcaagtacagcgaggccctggaggagcatgggaacttcctcatcacagtgccggga
ggatctgacggccccagcggagtgctgatctgctctgagaactacatcacttacaagaac
tttggggaccagcctgacatccgctgccccatcccacgcaggaggaacgacctggacgat
ccagagcgcgggatgatctttgtctgctccgccacgcacaagaccaagtccatgttcttc
ttcctggcgcagaccgagcagggagacatcttcaaagtcaccctggagacggatgaggag
atggtgactgaaatccgtttgaagtactttgacaccattcctgtggccacctccatgtgc
gtgctgaaaacgggcttcctctttgtgtcctcagagttcgggaatcattacctgtaccag
atcgcacacctgggggatgatgacgaggagccagagttctcctctgccatgccactggag
gagggagacaccttcttcttccagccgcggccgctgaagaacctggtgctggtggatgag
caggagagcctctcccccatcatgagctgccagattgctgatctggcaaatgaggacacg
ccccaactgtacgtggcctgtggcagggggcccaagtccaccctgagggtactgaggcac
ggactggaggtgtccgagatggccgtctccgagctgcccggtaaccccaatgcagtgtgg
acagtgagacgtcacattgaagatgagtttgacgcctacatcatcgtgtcctttgtgaac
gctacgctggtgctgtccatcggggagactgtggaggaagtgactgactcaggcttcctg
ggcaccactcccaccctgtcctgctctctgctcggggaggacgcgctggtgcaggtgtac
ccagatgggatccgtcatatccgggcagacaagagagtgaatgagtggaagactccgggc
aagaagacgattgtgcgctgcgctgttaatcagaggcaggtggtgatcgcgctcactggg
ggagagcttgtctactttgagatggacccgtctggccaactgaatgagtacacggagcgc
aaggagatgtctgcggatgtggtctgcatgagtctggccaatgtgcctccgggagagcag
cgctcgcgcttcctggctgtggggctggtggacaacactgtgaggatcatctccctcgat
ccctcagactgcttgcagccgctcagtatgcaggcgctgccggcccagcctgaatccctg
tgtattgtggagatgggtggcacagagaagcaggatgagctgggagagaagggcagcatc
ggtttcctgtaccttaacatcggcctgcagaacggcgtgctgctccggaccgtgctggac
cccatcacaggcgacctgtccgacactcgcacccgatacctgggctctcgcccggtgaag
ctcttccgtgtcaggatgcagggccaggaagcggtgttggccatgtccagccgctcatgg
ctcagttactcctatcagtctcgcttccacttgacgccgctgtcctatgagactctggag
tatgcgtctggctttgcctcggagcagtgtccggagggcatcgtggccatttccaccaac
accctcaggatcttggctctggaaaagctgggcgcagtgttcaatcaggtggcgttcccc
ctgcagtacaccccacgcaaatttgtcattcaccccgaaaccaacaacctgatcctgatc
gagacggaccacaacgcctacactgaggccaccaaggcacagcggaagcagcagatggct
gaggaaatggttgaggccgccggagaggatgagcgggagctggcagcggagatggcggct
gcattcctcaacgagaatcttcctgaggcgatcttcggcgctcccaaggcaggcagcgga
cagtgggcctcgctggtgcggctcatcaaccccattcagggggccaccctggacctggtg
cagttggagcagaacgaggcagcattcagtgtgactgtctgcaagttcgccaacggggga
gaggattggtatgtgctagtgggcgtggccagagacctgatcctgaacccgcgctctgtg
ggtggtggcttcatttacacctaccgcctggtgagcggcggagagaagctggagttcatg
cacaagacgccagtggaggatgtcccctctgccatcgcgcccttccagggcagggttctc
atttctattgggaagttgctgcggatctacgaccttgggaaaaaaaagctgctccgcaaa
tgcgagaacaagcacgtcccgaacctcatcacagggatctaccccatggggcaccgcgtg
gtcgtgacggacgtgcaggagagcctgttctggatccgctacaagcgcaatgagaaccag
ctgatcatcttcgctgatgacacgcaccctcgctggctcaccacggcctgtctgctcgac
tacgataccatggcctctgcagacaagttcggcaacatcagcattgtcaggttgcccccg
aatacaaacgatgatgtggatgaggatcccacaggaaacaaggcactgtgggacaggggt
cttcttaacggggcctcccagaaggcggaggtgatcatgaactaccacatcggggagacg
gtcctctccttgcagaaaaccacgctgatccctggaggctcagagtccctggtgtacacc
accctgtctgggggcatcggaatcctggtccccttcacctctcacgaggaccatgacttc
ttccagcatttggagatgcacatgcgttcagaatacccccctctatgtggccgggatcac
ctcagctttcgctcctactacttccctgtcaagaacgtgatcgacggggatctgtgtgag
cagttcaactctatggaccccaacaaacagaagagcgtgtctgaggagctggaccgaaca
ccacccgaggtctccaagaaactggaggatatccgaactcgctacgctttctaa
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