Polyodon spathula (Mississippi paddlefish): 121325442
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Entry
121325442 CDS
T07273
Name
(RefSeq) exosome complex component CSL4-like isoform X1
KO
K07573
exosome complex component CSL4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121325442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121325442
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121325442
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
121325442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
121325442
NCBI-ProteinID:
XP_041123849
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All DBs
Position
13:8990142..8993499
Genome browser
AA seq
197 aa
AA seq
DB search
MALIEKPQMLILGERLCSIDDCIAGVGTYSRHGYILASLAGYVLKKNEGEVLPVISVVRE
TEAQLLPDVGAIVTCKVTSINPRFVKVHILYVGSTPLKDKFRGTIRKEDIRATEKDKVEI
YKSFRPGDIVLSKVISLGDVQSNYLLTTAENELGVVVAYSEAGAQMVPISWCEMQCPRTH
AKEFRKVARVQPEYLQA
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggctcttattgaaaaacctcaaatgttaatcctaggtgagagactgtgcagcatcgac
gactgtattgcgggggttggaacttactcgcggcacggctacatcttggcttccctcgct
ggctatgtgctgaagaaaaacgaaggagaagtgctgccagtgatctctgttgtgagggag
acagaagctcagctcctgcctgatgttggtgctatagtaacttgcaaggtgaccagtata
aacccaaggtttgtgaaggttcacatcctttatgtggggtcaacccccctaaaggacaaa
ttcagaggaacgataagaaaagaagatataagagcaacagaaaaagataaggtggagatc
tacaaaagtttcagacctggagacattgttctatcaaaagttatctccctgggtgatgtc
cagtccaactacctcctgacgacagcagagaatgaactgggggtagtggtggcgtacagt
gaggcaggggcgcagatggtgcccataagctggtgtgagatgcagtgccctaggactcat
gccaaggagttccggaaggtggcaagagtgcagccagagtaccttcaggcatga
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