Polyodon spathula (Mississippi paddlefish): 121325482
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Entry
121325482 CDS
T07273
Symbol
cdhr1a
Name
(RefSeq) cadherin-related family member 1 isoform X1
KO
K16501
cadherin-related family member 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pspa04515
]
121325482 (cdhr1a)
Cell adhesion molecules [BR:
pspa04515
]
Cadherins
Cadherin related
121325482 (cdhr1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_4
Anthrone_oxy
Cadherin_2
Arch_flagellin
Motif
Other DBs
NCBI-GeneID:
121325482
NCBI-ProteinID:
XP_041123927
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Position
13:12081776..12100300
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AA seq
865 aa
AA seq
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MKHIKKVDIPLFLTLVHVCLATEADYAPYFFNNGPSAKNGNMALFSLPEDTAIGTQVYIL
NGTDPEGDPVTFGLAFEPGFKNYFKVDSQTGIVTLIEELDREKQGEVEALVSISDGLNKV
VEKVRILVTDANDERPEFGNMSFIVNVSEDTPSGRSIFQTRAVDRDNGSGGSVTYYLHNT
HNTKFDIDRHSGVLRIKPGAALDYEKSRMHFITVVAKDGGGEFKGKYQVLSSSATVTINV
VDVQDTPPYFVGVPYYGYVYEDTLSGSEVFTVVANDGDYGNPNAIHYSIVSGSDDSFIIN
NTSGSIMVLDYPIHLKKVLYELKIQASEVSPEGDVVAHAFSTVTIRVVDLNNHPPTFYGE
NGPQSKFELTMYEHPPEGEILRGLKITVNDSDQGANAKFSLRLVGPRGIFRAVPQTVLNE
AQVTIIVENSEAIDYEKYQSLSFKLLAVEIDTPEKFSSTADIVIHLLDTNDNIPWFAIDY
YIARIPENSPGGSNVVSVTASDPDSGLWGEVKYSIYGPGSDLFLIHPSTGIIYTQPWATL
DAELKSKYNFYVKAEDTEGKYSLAEVFVTVLDVNDHSPEFNENILEKTMIIGAPVQVEAI
DDDAEEPNNIVEYSIMQSDPDNIFDINIDTGEIKLKSYIKSMDIVQNITKQKDCKWSVVV
QAKDRGSPSFSTTAVVKIDITEATQLKGPMAAFLFQSRDNHMKAIGMLVGVSCVMILITV
LISTAIFMRNENNRIMPARHIIKKRPKDYRSKKVRTRWLKFKRSNSPSKKLVTEDPEQNR
ESLNCNNNTLLPPPLPCAPALPPLPLYLPKQNKPEWSVSTVSGSVASKSKRQSRENNGPS
VSSALVSELKMKLERKMMESNISRY
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgaagcatataaagaaagttgatattccactcttcctcactttagtgcacgtctgtctg
gcaactgaggcagattatgccccctattttttcaataatgggcccagtgctaagaatggg
aatatggcattattcagccttccagaagacacagccattggcacacaagtatatatttta
aatggaactgatccagaaggggatccagtgacttttggcctagcctttgaaccagggttc
aaaaattactttaaagtggattctcagactggaattgtaactttaatagaagaacttgac
agagaaaagcaaggtgaggtggaagctctcgtcagtatttcagatggtctgaataaggtg
gttgaaaaagtaagaatattagtgacagatgccaatgatgaaagaccagagtttggcaac
atgtcttttattgtcaatgtctctgaggatacaccgtcaggaagaagtatatttcaaact
cgggcagtggatcgagacaatggttctggaggaagtgtcacatattatctacacaatacc
cataataccaaatttgacattgacagacacagtggagtgcttcgcattaaaccgggagca
gcactagattatgaaaaatcaagaatgcattttattacagtggtagccaaggatggtggt
ggagaattcaagggaaaatatcaggtgctgtcttcttcagctactgtaacaatcaatgtg
gtagatgttcaggacactccaccttattttgttggcgtgccttattatggatatgtgtat
gaggacacattatcaggatcggaagtctttacagtagtagccaatgatggagactatgga
aaccctaatgctatccattattccatcgtcagtggaagtgatgattcattcattataaat
aacacaagtggatcaataatggttcttgattatccgatccatcttaagaaggtgttatat
gaacttaaaatccaggcttcagaagtaagcccagaaggtgatgtggttgcgcatgcattt
tcaaccgtaaccattcgagttgtggacttgaacaaccaccccccaacgttctatggagaa
aatggccctcagagcaagtttgaactaaccatgtatgaacatccacctgagggagagata
ctgagggggttaaaaataactgtcaatgactctgatcagggagccaatgctaaattcagc
ctcaggctggtgggtccacggggcatcttcagagctgtcccacaaacagtactgaatgaa
gcacaagtcacaataatagtggaaaattctgaagctatagactatgagaagtaccagtcc
ttatccttcaagcttcttgctgttgaaatcgatactcctgaaaaattcagttcaactgct
gatattgttatccatctgctggatacaaatgacaacattccctggtttgctatagactat
tacatcgctagaatcccagagaattcacccggtggctccaatgtggtttctgtaacagct
tcagatcctgattctgggctgtggggtgaggtcaaatattccatctatggtcctggatca
gatctgtttcttattcatccatcaacaggaatcatttatacccagccatgggcaacacta
gacgcagagctgaaatctaagtacaatttttatgtgaaggcagaagatacagaagggaaa
tatagcttggctgaggtctttgtaacagttctggacgtgaatgaccactctcctgagttt
aatgaaaacatccttgagaagactatgattattggggcaccagtacaagtagaggcaata
gatgacgatgcagaggagcctaacaacattgttgaatactccataatgcaatcagatcca
gataatatttttgacataaacatagacaccggagagatcaagctgaaatcttacatcaag
tcaatggacatcgttcagaacattacaaagcaaaaggattgcaagtggtcggtggtggtc
caggctaaagacagaggctcaccatccttcagcaccactgctgtggtgaagatcgacatc
acagaggcgactcagctcaaggggcctatggcagcctttttatttcaaagtagggataat
cacatgaaagccataggcatgctcgttggcgtcagttgcgttatgatactcataacagtc
ttgatctccactgcaatcttcatgcgcaacgaaaacaataggatcatgcctgcccggcac
atcattaaaaagagacccaaagactatcgctcaaagaaggtcaggaccaggtggttaaaa
ttcaaacgctccaacagcccttccaagaagcttgtcactgaggatccggagcagaacagg
gagtctctgaactgcaacaacaacacgctgctgccaccccctctcccttgtgctcctgcc
ttgcccccactgcccctgtatctgcccaaacaaaacaagccagagtggagcgtctctaca
gtgtcagggtctgtggcatccaaatccaagaggcagtcacgcgaaaacaatggtcccagt
gtcagctctgcactggtgtctgagctcaagatgaagctggagagaaagatgatggagagc
aacatttctcgctattaa
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