Polyodon spathula (Mississippi paddlefish): 121325579
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Entry
121325579 CDS
T07273
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9-like isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121325579
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121325579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
GH101_dom-5
MUN
Motif
Other DBs
NCBI-GeneID:
121325579
NCBI-ProteinID:
XP_041124243
LinkDB
All DBs
Position
13:complement(43512257..43581958)
Genome browser
AA seq
2970 aa
AA seq
DB search
MTDPMMDFFDDANLFGGGLEGLADDSFAQTDPVSLVDELGLGAEFEPLQVEPLGQVKQPG
NPPSQPGLCFEQQMSQFEPLKGHHHHRQQGGQPFSIPNESTNNGLPRHSQYTASPLHQPS
QSNGLFPDVVDGSPMWGNQNEAQFHQHHGNPQSLQTQQQQQQHNKSFAAHHEFSLFQTLP
PQQQQQQQHRPPHTLQRQQQQQQQLSRNKNSPFNPGGQEAMSQSSSFLEVHSSSPVTNAH
QPDRLSSHPAPCQTPPAVSVHHFSNPAASVSLSFPGQSSSSTLNLPACSVNASSLFPPAQ
YSFSGTSNGGTLLSSTPCSGHLNRAFPLMGGTNGGASLQPSRYPQAVNPSCENTFQAMNS
GLRSFSGSPMSTEDMGCYPTVVSRSSDTLGHAIPPAERPLSSSNGFPTLEEHLLQQVQSH
SEAFPELDTDGLLEEDLLPQFEAAFGPQGHGCTQEEMQDNSGSNNSWPEEVGLPGDFQQQ
PPSSKNTNGSGSQSKLYSPQVRSSPVHSERRLKKAAAATAVMMEVLVEDKQEKANRIISE
AIAKAKERGEKNIPRVMSPESFPSSSSEARQERKAARRLKSKPKPKDKLSKKAKSGPSSK
SKQKTKISSPYSKRDSSSSSSKLPHCRSLSVSGAGTMTPKPTVLRPINSTSSLHKKIVIK
FGKKKRKSESSDEASDSEPTPRRFSKDSKRRSNRQVKRKKYAEEGECKISDEEKKVTLKV
KRTGPAPRKDHALQLFVENPSEEDAAVVDKIMSSRRVKKEVTPGVMAEVEEFYVKYKNYS
YLHCEWATEQQLLKDKRIHLKIKRFKIKQMQRAHFFADMEEDPFNPDYVEVDRVLDVSYC
KDKDTGEPLIYYLVKWSSLPYEDSTWELKEDVDQSKIEEFERLQAARADPRRRERPPANM
WKKREESREYQNGNQLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIYL
TGIRGPFLIIAPLSTIANWEREFRTWTHLNVIVYHGSMISRQMLQQYEMYCRDSQGRVVR
GAYKFQAIITTFEMILGGSPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKVLL
TGTPLQNTVEELFSLLHFLEPSHFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKE
DVEKKLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGVGQANVPNLLNTMMELRKCC
NHPYLIKGAEEKILEDFRETYSPASLNFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIF
SQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLG
INLTAADTCIIFDSDWNPQNDLQAQARCHRIGQDKAVKVYRLITRNSYEREMFDRASLKL
GLDKAVLQSMSGRENSAGGQMQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKAEIDMEALNDRNSL
VIDTPRVRKQTRPFSATKEELAQLSEGESEGDDKPKLRRPHDRLSGYGRTECFRVEKNLL
VYGWGRWRDILQHSRFKRQLNEHDVEVICRALLSYCLLHYRGDDKIKSFMWDLIAPSEDG
HTRELQNHLGLSAPVPRGRKGKKMKTQPSTFDIQKAEWLRKQDPEHLLQDEGYKKHIKHH
CNKVLLRVRMLYYLKQEVIGDHFQKVIDGADSSEIDMWVPEPDHSELPANWWDADADKNL
LLGVFKHGYEKYSTIRGDPALSFLERVGKPDEKAIAAEQRANDYMDGDGDDPEYKPAPAL
LKDEMEDDASSPGELIIADGNGDGQMMMMMEGDTVYWPPPSALTTRLRRLITAYQRNTKN
RQLRQIQQVRPVQPSALPPAHLEPINPKIAAKIERQQRWTRREEADFYRVVSTFGVVFDP
EQDRFDWTKFRAMARLHKKTDESLQKYLCAFSAMCRRVCRLPPKEGEPVDPSISIQAITE
ERASRTLYRIELLRKVREQVLRHPQLYERLQLCHPSQDLPVWWETGTHDRDLLIGAAKHG
VSRTDYHILRDPELSFMMAQRNYSQNKGLQSRTPTPLLQQQQQHQMGLAGSPLTPQPRLQ
DPKAGQPEDSRPKGERTDRLKEEPHTSEEEGFGLAGESKVKLEPWSPQGSACMSLGALDF
KEEGERRMVAARTEPLTPSSVVKKQKRSSKRGRGGGSDSDSDGSSSSSRSSSSSSSSSCS
RSGSSSSSSSSSSSCSSGSSSSSSSSSSSSEDSDSDSEDRKENAEVTPVVKGFDEDSVAS
LSTTHDETQDSFLTDNGAPSSAHVFQGGYMLAASYWPKDRGMINRLDSICQAVLKGKWPT
VRKSYEGTAVASFYTTKLLDSPGADAGLQGLPAPRDELALSSQMSKVKKHVREKEFTVKI
NDQEGGLKLTFQKQAPPQKRPLDSEEGSLGQQQYLARLRELQSASDTSLADFSKSLPAPV
ATAAAAAAAASSHMRPNGVLDGQPAVKKRRGRRKNVEGMDLLFLTKNKPAPNHLSPGSGN
CPKDSSCVNPALALGQPPGTLDTESRVPVINLKDGTRLAGDDAPKKKDLEKWLKGHPGYV
ADVGAFIPGLGKMTFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQVINRRNARKVGGAFA
PALKNLCRFLQENREYGVPPEWAEVVKHSGFLPESMFDRILTGPVVRQEASRRGRRPKSD
VSNAVAGSSGPAMPVSPLLTNGLLSGMDLSSLQALQQNLQSLQSLQLTAGLMGLPAGDAN
NLAAMFPMMLSSMAGLPNLLGMSGLLGTCPEAPGSEDRKGSSADPYTAEAKGDRTEGSLA
GSGEASVTNSPSTSTAAPLSASAVASAAAASNHPLALNPLLLSSMLYPGMLLTPGLNLPV
PPVSQSNLFDMQQSANSDSSAVKASEGAAQETPDEPQEEESGESERGLGGVDPQRDNSTE
EGSEKGASSSSSESGSSSSSSDDSDSSDED
NT seq
8913 nt
NT seq
+upstream
nt +downstream
nt
atgacggatcccatgatggactttttcgatgatgctaatctgttcggagggggattggag
gggctggcagacgacagctttgcacagactgacccggtttctctggtggatgagctgggc
ctgggcgcagagtttgagcctctgcaggtggagcctctcggccaggtgaagcagccgggg
aaccccccctcccagcccggcctctgctttgagcagcagatgagtcagttcgagcccttg
aaaggtcaccaccaccaccggcagcaagggggacagcccttctccatccccaacgaaagc
accaacaatgggcttccccggcactctcagtacactgcttccccgctgcaccagccaagc
cagtcgaacggattgttcccagacgtggtggatggaagcccgatgtgggggaaccagaac
gaagctcaatttcaccaacaccacgggaacccccagtctttgcaaacacaacaacagcag
cagcaacacaacaaaagctttgcagcacatcatgaattttccttgtttcagaccctcccc
ccacagcagcagcagcagcagcagcaccgccctcctcacacgctgcagcggcaacaacaa
cagcagcagcaattgtcgcgcaacaaaaacagcccgtttaaccctggtggccaggaggct
atgagccagtctagctcctttctggaagttcacagctcctcacccgtgaccaacgcacac
cagccagacaggctgtcaagccacccagctccatgtcagacccccccggctgtttctgtg
caccacttctccaaccctgcggcgagcgtgtccctgtctttcccgggacagtcgtcgtcc
tccaccttgaacctgcctgcttgctcagtgaatgccagctctctgttcccccctgctcag
tattccttctcaggcacctcaaacgggggcacgctgctgtcttccacaccctgcagtggt
cacttgaatagagcctttccactgatgggagggaccaacgggggagcgtcgctgcagccg
agtcggtacccacaggctgtaaaccccagctgcgagaacactttccaagctatgaattcg
gggctgagaagctttagtggctctccgatgtctacggaagacatgggctgctatccgacc
gtggtcagcaggtcctccgacactctgggacacgctatcccccctgcggagcgccctcta
tccagcagcaatggcttccccacgctggaggagcacttgctccagcaagtgcagagtcac
agcgaggcctttccagagctggacacggacggcctcttggaagaagacctgctcccccag
ttcgaggccgctttcggcccgcagggtcacggttgtacgcaggaggagatgcaggacaat
tcgggttccaacaactcctggccagaggaagttggcttgccaggggatttccagcaacag
cccccttcctcgaagaacactaatggttcaggctcccagtctaagctgtacagcccccag
gtgaggagcagcccagttcactctgagaggaggctgaagaaggcagcagcggcgacggct
gtgatgatggaggtccttgtggaggacaagcaggagaaggccaaccgcatcatctcggag
gccatcgccaaggcaaaggagcgcggggagaagaacatcccgcgcgtcatgagccccgag
agcttccccagctcctccagcgaggcccggcaggagcgcaaggcggcacgccggctcaaa
tccaaacccaaacccaaggacaagctctccaagaaggccaagagcggcccgtcctccaaa
tccaagcagaagaccaagatcagctccccctactcgaagagggacagcagcagcagcagc
agcaagcttccccactgccgcagcctgtcggtgagcggcgctggtacgatgacccccaag
cctacagtattgagacccataaactcaacgagctccctgcacaaaaaaattgttatcaaa
tttggtaagaagaagaggaagagcgagtcctcggatgaagcgtcggacagcgagccgacc
ccgcggcgcttctcaaaggactcgaagagacgatctaatcggcaagtgaaaagaaaaaaa
tatgcagaagagggagagtgcaagatatcagatgaggagaagaaagtgacgttgaaagtg
aagaggaccggccctgcaccccgcaaggaccacgctctgcagctgttcgtggagaacccc
agtgaagaagatgcagcggtcgttgataaaatcatgtcttcgaggagagtgaaaaaagag
gtcacgccaggagtgatggctgaagttgaagagttctatgtaaaatacaaaaactactcc
tatttgcattgtgaatgggccacagaacaacagctcttaaaggacaagaggattcatctg
aagattaaacgattcaagattaaacaaatgcagagggcccacttctttgctgatatggag
gaggatcccttcaacccagactacgttgaggtagatagagtgctagacgtctcctactgt
aaggacaaggacacaggcgagcctttgatttattacctggtgaagtggagctcgctgcct
tatgaagacagcacttgggagctgaaggaagacgttgaccagtctaaaatcgaggagttt
gaacgactgcaggcagccagagcagaccctcgaagaagggagcgacctccagccaacatg
tggaagaaaagagaggaatccagggagtatcaaaacggaaaccagctcagggactaccag
cttgaaggagtgaactggcttctcttcaactggtacaacagacgaaactgtattcttgct
gacgaaatgggcctcggcaagaccatccagtccatcacattccttgaagaaatctacctg
acgggaatccgggggcccttcctgatcatcgcccccctgtccaccatcgcaaactgggag
cgggagttcaggacctggacccacctcaacgttatcgtctaccacggcagcatgatcagc
cggcagatgctgcagcagtacgagatgtactgcagggattcccagggccgtgtggttcgt
ggagcgtacaagttccaggccatcatcaccacgttcgagatgatcctcgggggctccccg
gagctgaacgccatcgagtggcgctgcgtgatcatcgacgaggctcacaggctgaagaac
aagaactgcaaattactggaggggttcaagctcatgaatctggagcacaaggtgctgcta
acaggaaccccgctgcagaacacagtggaggagctcttcagcttgctgcacttcctcgag
ccatcccacttcccctccgaatccaccttcatgcaggaattcggagacctcaagaccgag
gaacaggtccagaagctccaggccatcctgaagcccatgatgctgcggcgactaaaggag
gacgtggagaagaagctggctcccaagcaggagaccatcatcgaggtggagctcaccaac
atccagaagaagtactaccgagccatcctggagaagaacttctccttcttgtcgaaaggc
gtgggccaggccaacgtcccaaacctgttgaacaccatgatggagctgaggaagtgctgc
aaccacccctaccttatcaaaggggcggaggagaaaatcctggaagatttccgtgagaca
tacagcccggcttccctgaacttccacctgcaggcaatgatccagtccgcagggaagctg
gtcctcatcgacaagctgcttcccaagatgaaggccggagggcacaaggtgctcatcttc
tcccagatggtgcgctgcctggacatcctggaggactacctcatccagaggaggtacctg
tacgagcggatcgacggcagggtgcgggggaacctgaggcaggcagctatcgatcgattc
agcaagcccgactcggaccgctttgtgttcctgctgtgcaccagggctggcgggctgggg
atcaacctgactgcagccgatacctgcatcatcttcgactcggactggaacccccagaac
gacctgcaggctcaagcacgctgtcacaggattggtcaggacaaggcggtgaaggtgtac
aggctgatcacccgcaattcctatgagagggagatgttcgacagagccagcctgaaactg
ggcttggacaaggctgtgctgcagagcatgagtgggagagagaacagcgcaggggggcag
atgcagcagctctccaagaaggagattgaggacttgctgcggagaggggcctatggggcc
atcatggacgaggaggacgaagggtccaaattctgcgaggaagacatcgaccagatcctg
cagcggcgaaccaaaaccatcaccatagagtcggaggggaggggctccacttttgcaaaa
gccagtttcgtggcgtccgggaacaggacagacatctctctggatgatccaaacttctgg
gacaagtgggctaagaaagcagagattgatatggaggccctgaatgacagaaacagcctg
gtgatcgacaccccgagagtgaggaagcagacccgacccttcagcgccacgaaagaggag
ctggcgcagttatcggagggggagagcgagggcgacgacaagcccaaactgcgccggccg
cacgaccgcctcagcggctacggcaggaccgagtgcttccgggtcgagaagaacctgctg
gtttatgggtggggccgctggagagacatcctgcagcacagccgcttcaagaggcagctg
aacgagcacgacgtggaggtcatctgccgggcgctgctgtcctactgcctgctgcactac
cgaggcgacgacaagatcaagagcttcatgtgggatctgatcgctcccagcgaggacggc
cacaccagggagctgcagaaccacctcgggctctctgctccagttcccaggggccgaaaa
gggaagaagatgaagactcagcccagcacttttgacatccagaaagcagagtggctgcgc
aaacaagacccagaacacctgctgcaggacgagggctataagaagcacatcaaacaccac
tgcaacaaggtgctgcttcgggtgagaatgctgtattacctgaagcaggaggtaatagga
gaccatttccagaaggtgattgacggggctgattccagcgagattgacatgtgggttcca
gaaccggaccactcagaactccctgctaactggtgggatgcggatgccgacaagaatctc
ctgcttggcgtctttaagcatggttatgaaaagtatagcacaataagaggagacccggcc
ctgagctttttggagcgagtgggcaagcctgacgagaaggcaatcgccgcagagcagagg
gccaacgactacatggatggtgacggtgacgaccccgaatacaaaccggctccagccctg
ctaaaggatgagatggaggatgatgcctcgtcccctggagagctgatcattgcagacggt
aacggagacgggcagatgatgatgatgatggaaggcgacacagtgtactggccccctccc
tctgccttaaccactcgcctgcgtcgactcatcacagcctaccagcgcaacaccaagaac
aggcagctccgccaaatccagcaggtgcgcccagtgcagcccagcgccctgccccctgcg
cacctggagcccatcaaccccaagatagcagcaaagatagagcgacagcaaaggtggacc
agacgagaagaggcagatttctacagagtggtatccacgttcggagtggtgttcgaccca
gagcaggaccgcttcgactggaccaagttccgtgccatggccaggcttcacaaaaagacg
gacgagagcttgcagaagtacctgtgtgctttctcagccatgtgccggagggtctgccgg
cttccccccaaggaaggagaacctgtggacccatccatctctatccaggcgatcacggaa
gagcgagcctcgcgcacactgtaccgcatcgagctcctgcgcaaggtcagggagcaggtg
ctgcggcacccccagctctacgagcggctgcagctgtgccaccccagccaggacctgccg
gtgtggtgggaaacgggcacccacgaccgggaccttctgatcggcgcagccaagcatggg
gtcagccgcacggactaccacatcctccgagaccccgagctgagcttcatgatggcccag
agaaactacagccagaacaaagggttgcagtctaggacccccacacccctcctgcagcaa
cagcagcagcatcagatgggcctggctgggtctcccctcaccccgcagcctaggttacag
gaccccaaggcaggtcagccagaggactccagaccaaaaggggaaaggactgatcggctc
aaagaggagccacacacgtccgaggaggaagggtttgggttagcaggggaatccaaggtc
aaactggagccctggagcccgcagggaagcgcctgtatgtccctgggtgcgctggacttc
aaggaagagggagagaggcgcatggtggcagccagaactgaacccctaactcccagctcc
gtagtgaagaagcagaagcgcagcagcaagagggggcgaggcggggggtccgactcggac
tctgatggctcgtcctcctcctcgcgctcctcctcttcctcttcgtcttcctcgtgctct
cggtctggctccagctcctcctcctcttcctcctcctcctcctgctcatcaggatcctcc
tcttcgtcatcctcctcctcttcctcctcggaagacagcgacagcgactccgaggacagg
aaggagaacgctgaagtcacccctgtagtgaaaggtttcgatgaagacagcgtggcgtcg
ctcagcactacccacgacgagactcaggacagcttcctcactgataacggggcacccagc
tctgcccacgtctttcagggcgggtacatgctcgctgcctcctactggcctaaggatcgg
gggatgatcaatcgcctggacagtatttgccaggcagtgctgaaagggaaatggcctaca
gtcaggaagagctacgaaggcactgccgtggcctccttttacaccaccaagctcctggac
agcccaggcgcggacgcagggctccaggggctcccagctccccgggatgagctggctctg
tcgtctcagatgtcaaaggtgaagaagcatgttcgagaaaaggagtttacagtgaaaatc
aatgaccaggaaggtggcttgaagctgactttccagaagcaggcccccccccagaagagg
cccttggacagcgaggagggctccctggggcagcagcagtacctggctcgcctgcgggag
ctgcagagcgcctcggacaccagcctggccgacttttccaagtctctgcccgctccagtg
gcaacagcagcagcagcagcagcagcagcctctagccatatgagacctaatggagtactg
gatggacagcctgctgtgaagaagaggagaggcaggcggaagaacgtagaaggcatggac
ctgctcttcctgaccaagaacaagccagctcccaaccatctcagcccaggcagtggcaat
tgccctaaggacagctcctgtgtgaacccagcactggcactcggtcagcctccaggaacg
ctggacacagagagcagagtcccggtgattaacctgaaggatgggacacggctcgctggg
gacgatgcacccaagaagaaggatctggagaagtggctgaagggccacccaggatatgta
gcagacgtgggagcattcattcctggacttggtaaaatgacatttcaagacggcagaccc
aaacagaagaggcatcggtgtagaaatcccaacaagattgatgtgaacagcctgactgga
gaggaaagggtgcaggtcatcaaccggaggaatgcacgaaaggtgggaggggcatttgct
cctgctctgaagaacttgtgcagattcctgcaagagaaccgggagtatggagtaccccct
gaatgggcggaggtagtgaagcattccggcttccttccagagagcatgttcgaccgcatt
ctcacgggacccgtggttcgccaggaggcgagcaggcgaggccggcgaccgaagagcgat
gtttccaacgcggtcgctgggagcagtggccctgcgatgcctgtcagccctctgctgacc
aacggcctgctctcagggatggacctgtccagcctgcaggccctgcagcagaacctccag
agccttcagtccttgcagctgaccgccggtctgatgggcctgccagccggagacgccaac
aacctggccgccatgtttcccatgatgctgtccagcatggcagggctgcccaacctgctg
ggcatgagcggcctgctgggcacgtgccccgaggcgcctggctccgaggacaggaaggga
agcagcgccgacccctatacagcggaagccaagggcgacaggacagaaggttccctggct
ggctcgggagaagcctccgtgaccaactctccttcgacctccactgctgcgccactaagt
gcttctgctgtagcctcagcagctgcagcctcaaaccacccgctggctcttaaccccttg
ttactatccagtatgctttatccagggatgctactcacaccaggccttaatcttcctgtt
ccaccagtgtctcagtctaatcttttcgacatgcagcagagtgcaaacagtgactcaagc
gccgtgaaggcctccgaaggagcagcgcaggaaaccccggacgaaccacaggaagaggag
agcggagagagcgagcgggggctcggcggtgtggacccccagagggacaacagcacagaa
gagggttccgagaaaggggcttcttcgtcgtcgtcagagtctggaagttcatcgtcttca
tcggatgattcggactcgagcgatgaagactga
DBGET
integrated database retrieval system
