Polyodon spathula (Mississippi paddlefish): 121325587
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Entry
121325587 CDS
T07273
Name
(RefSeq) exosome complex component MTR3-like
KO
K12587
exosome complex component MTR3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121325587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121325587
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121325587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
121325587
NCBI-ProteinID:
XP_041124273
LinkDB
All DBs
Position
13:44685530..44686920
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AA seq
284 aa
AA seq
DB search
MPVDNKRVCGPEESQSPWLFLQQTRGQPTWVPQTRESERRADSRRRRGQVDARPMFARCG
LVSQAKGSAYIEAGNTKLICSVYGPRETERKDELDMRAGRLVCTFRLAPFSCAKRCPWIQ
GSQEKDLTLSLQESLQPGVCLHRYPRSQIEVNVLVLENDGSALAHAITCASLALADAGIE
MYDLVIGCSLRQDGAAYLLDPTCCEETGDESTENQGSLTVALLPALNQISGLLSTGEMKE
ATMVGAIRVCVEGCQRLYPAAQQCLLKSVRRKVHARSTDVDVGR
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgccggtggataataagcgagtttgtggaccagaggaatcccaatcgccctggctgttc
ttgcagcagacccgggggcaaccgacctgggtcccccagacaagagagtcggaaagacgg
gcggacagcaggcggcggcggggccaggtggatgcgaggccgatgtttgctcgctgcgga
ctggtgagccaggccaagggctctgcttatatcgaggctgggaacacgaagctgatctgc
tcggtgtacggaccgcgcgagacggagaggaaagacgagctggatatgagggcgggcagg
ctggtgtgcactttccgactcgctcccttctcttgcgcgaaacggtgcccatggatccag
ggcagccaggagaaagacctaaccctgagcctgcaagagagcctgcagcccggggtttgc
ctgcacaggtacccgcggtcgcagatcgaggtgaacgtgctggttttggagaatgacggc
tctgctctggcacacgcaatcacctgcgcctccttagctctggctgatgccgggatcgag
atgtacgacttggtcatcggatgctcgttaagacaagacggtgctgcgtatttgctcgac
ccgacctgctgcgaggaaaccggggacgagtcgactgagaaccaagggagcttgactgtg
gcgctgctacccgctctaaaccagatctcagggctgctctccaccggggagatgaaggag
gcgaccatggtgggagccatcagagtttgtgtcgagggctgccagcgactgtaccctgca
gcccagcagtgcttgctgaaatcggtgcggcggaaggttcatgcccgcagcactgacgtg
gacgtggggcgctga
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