Polyodon spathula (Mississippi paddlefish): 121325605
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Entry
121325605 CDS
T07273
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121325605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121325605
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121325605
mRNA degradation factors
5'-3' decay
Decapping complex
121325605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_HPS5
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
EIF3I
Cap4_nuclease
Motif
Other DBs
NCBI-GeneID:
121325605
NCBI-ProteinID:
XP_041124346
LinkDB
All DBs
Position
13:complement(41478998..41499071)
Genome browser
AA seq
1410 aa
AA seq
DB search
MASSSNIDIEDATQHLRDILKLDRPGNSVTHDYDLNLFEKHFPDRSNETPKKSTSFNGEL
NGLMGADLITGGDPGALSEMSLHSPDDINMQERQTICLSGEDSSTCIVISARDVEIVASH
DSSINSKARGSNKVKIQPVAKYDWEHKYYYGNLIAVSNSYLAYAIRGANSIAMIRVLNVG
TAERTLLKGFTGGVTDLAFAHLNSNQLACVDEAGSLFVWQLTEENGKIQDEIIVHVKRPE
STPLNSNRRIIWCPFIPEENEENAEDGCQTLALLHEDRAEVWDLEIIRSNNSSWPIEATD
FKEGFITVKGHNARISEGALSPDGTVLASASHDGCVKFWQIYIEGQDQPRCLHDWKPHNG
KPLSCLLFCDNHKKQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSGV
LPSLKASLDLSAEYLILTDVQRKVLYVMELLQDQEKGRASFTAISEFLLTHPVLSFGIQD
VSRSRQRHTEVLPAEEESESMTVEGSQVPLESKAGVQIKLYCVHTKSLQDVQIWFQPYLS
SGNSTFLPPSGSHKDFSFADHLTDMSMEGLGSDKESGRGSPHDLRRISDLPAPADFLSAT
SDFKPKLMTPDAFMTPSGSAQQISASPGSSASTLTAVTGMSSSCVSDSGMSRTGEEMTKL
SLDSSMTLSNSTGMQGSPRNNSILIPGLSDQLPSKTVQVIPPANPPLSLDLQSIEPLLIP
QASPTRERSPDVISSASTAMSQDIPEIASETLQRGLAASGGLPAEVLEPTLQSDSMASAA
SALHLLSPRNRHNSEHSHHSLDMGSGEAERLSSTPSLLETALSQESAAAAAAADNSGSQP
WPAAPDITRETRNSLIDSSRGDVKEKHKASPSHRHAYHLPQHDSQDASAEQSDHDDEVAS
LASSSGNYGSKSTHRLPVEWKSSPRGSPKLKRKSKKEEGDVAQARSSDHQLNTELQEELL
SLVRCQQREISELRQSQLELMQRLTNHMDAVQSSIMGHVERVMITQQEQEQRRMELILAD
GHDRNRQFQEQLSQQLSQSVSNTLSSKLDKTIRDEMKKTIPQSISKSLEPVTGQLSNTIA
AKLAAVEGTLKENICIGLPPSNTTDAIGRAAADALQGPIQAAYKEAFQSIVLPVFEKGCQ
SMFQQINDSFKSGTQEYIQQLEGHLKNKKLREHDVRDPMMGLLQQMIDTFQNTTDQLPSN
ITASVRSEVQHQLHITVGNLQDSILTQVQRIVKGEVSMAMKEQQAAVTTSIMQAMRSAAG
TPIPSSHLDYQTQQANILQLLQQGQLNQAFQQALSAADLNLVLYVCETVNSQQVFGQNSC
PLIQPVLLSLIQQLSTNLATRTELKISYLEDAVMNLDHGDPVTRDHMSSVLSQVRQKLFQ
FLQADPHNVLSKRARRLMMMLQGLVNHGMS
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagctccaacattgatatagaggatgcaacccaacaccttcgggacatcttg
aagctggaccggcccgggaacagcgtgacccacgactatgatctgaacttatttgagaaa
cattttccagatcgctcaaatgaaactccaaagaagtcgacgtctttcaatggggaactg
aatggcttgatgggagcagacctcataacagggggagacccaggggccttgtcggagatg
tctctccatagcccagatgacatcaacatgcaggagagacaaaccatctgtctctctgga
gaggacagctccacctgcatcgttatatctgccagagatgtggaaatagtggcaagccat
gactccagcatcaacagcaaggccagaggcagtaacaaggtaaaaatccagcctgtggca
aagtatgattgggagcacaagtactactatgggaacctgatagctgtatccaactcctac
cttgcatatgctatcagaggtgcaaacagcattgctatgatccgtgtgctgaacgtaggc
accgcagagcgcactcttctgaaggggttcactggcggagtgacagatctggccttcgct
catctcaactctaatcagctggcctgcgtggacgaggctggaagcctgtttgtgtggcag
ctaacagaggaaaatgggaaaatacaagatgagattattgttcacgtcaagaggccggag
agcaccccattgaacagtaacaggaggatcatttggtgccctttcataccagaggagaac
gaggaaaatgcagaagatggatgtcagactctggccttgctacacgaggacagggctgaa
gtttgggatttggaaatcattagaagcaacaacagctcatggcccatagaagcaactgat
ttcaaagaaggctttatcactgtcaaaggacacaacgcacgtatcagtgaaggtgccttg
tcacctgacgggacagtccttgcctcagccagtcatgatggatgcgtcaaattctggcag
atctacattgaaggacaggatcaaccgagatgccttcatgactggaaaccccacaatggt
aaaccactgtcttgcctgctgttttgcgacaatcacaagaagcaagaccctgaagttcca
ttctggagattcctgatcactggtgcagatcagaaccaggagctgaagatgtggtgcact
gtgtcctggacttgcttgcaaactatccgattttcaccggatccttttaactccggtgtt
cttccaagtctgaaagccagtttggacctttctgctgaatacctgattctgactgatgta
cagaggaaagtgctgtatgtaatggagctgctgcaggaccaggagaagggcagagccagt
ttcactgccatctccgagttcctgctcacccaccctgtgctgagtttcggcatccaggac
gtgagccgcagccgccagagacacacggaggtcctgccggccgaggaggagagcgagagc
atgactgtggaaggaagtcaagttcctttggaatccaaagcaggggtccagataaaatta
tactgtgtgcacacgaagtcactccaagacgtgcagatctggtttcagccttacctgagt
tctgggaattccacatttctgcctccctctggctcacacaaggacttcagttttgcagac
cacttgacagacatgagcatggaagggttgggctcagacaaggagtcgggccgcggctct
ccgcatgacctccgcaggatatccgacctgcccgctccagctgacttcctgtccgctacc
agcgacttcaaacccaaactcatgactccagatgcgttcatgactcccagcggttcagca
cagcagatctcggcctctccaggcagcagtgctagcaccctgaccgcagtaactggaatg
agcagcagttgtgtcagcgacagtggaatgtccaggactggtgaagaaatgacaaagctt
tccctggatagcagcatgactctcagcaacagcactggcatgcagggcagccctcggaac
aactctatactaatccctggactttctgaccagctgccttccaaaactgtccaggtgatt
cctccagctaaccctcccctctccctggacctccaatccatcgagcccctcctgataccc
caggcctctccgacccgcgagcgctctcccgacgtcatttcctctgcctccacggccatg
tcccaggatatccctgagatcgcctcagagaccctgcagcgtgggctggctgcttcaggg
ggcctgcctgccgaggtcctggagcccaccctccagtcggacagcatggcctctgctgcc
tcggccctacatctcctgtcccccaggaaccggcacaactctgagcacagccaccactcc
ctggacatgggctctggggaggcggagcggctgtccagcaccccctccctcctggagacg
gctctctcgcaggagagcgcagcggccgcggctgcagcagacaacagcgggagccagccc
tggcctgctgcccctgatattaccagggagaccaggaacagcctgattgacagctcgcgt
ggcgatgtgaaagagaagcacaaggcttccccatcccacagacacgcctaccacctcccc
cagcacgacagtcaggatgccagcgcagagcagagtgatcacgatgatgaagttgcaagc
cttgcatcctcctcaggaaactatggttccaaatccacccacagactacctgtggaatgg
aaatcctctccacggggttccccaaaattaaagagaaagagcaaaaaggaggagggggat
gttgctcaggcaaggtcatctgatcatcagttgaacactgagctgcaggaggagctgctg
tccctggtgcgctgtcagcagagggagatctcggagctgaggcagagccagctggagctg
atgcagaggctcaccaaccacatggatgccgtccagagctccatcatgggccatgtggag
cgagtgatgatcacccagcaggagcaggagcaaaggagaatggagctgatcctggccgat
gggcacgaccgcaacagacagttccaggagcagttgtctcagcagctgtcgcagtctgtc
tccaacaccctgtccagcaagctggataagaccatccgggatgagatgaagaagaccata
cctcagtctatatccaagagcctggagccagtcacaggtcaactgagcaacacaattgca
gctaaactcgccgcagtggagggaacactgaaagagaacatttgtattggtttaccacct
tcaaacactacagatgcaattgggagagcggcagcagatgctttacagggacccatccag
gcggcatacaaggaggctttccagagcatagtgttgccagtctttgagaagggctgccag
tccatgttccagcagatcaatgacagctttaagagtggaacacaggaatatatccagcag
cttgaaggccatctgaaaaacaagaagttacgggagcatgatgttcgggaccctatgatg
gggctactacaacagatgatcgacactttccagaacaccacggaccagctgccttccaat
atcacagccagtgtgcgctccgaagtgcagcaccagctacacatcacggttggaaacctg
caggactctatcttgacccaggttcagcgcattgtgaagggtgaggtgagcatggccatg
aaggagcagcaagctgcagtcaccaccagtatcatgcaggcaatgcgctcagctgctggg
acgcccatcccgtcctcgcatctcgattaccagacccaacaggctaacatcctccagctg
ctgcagcaagggcagctcaaccaggctttccagcaggcactgtctgctgctgacctgaac
ctggttctctatgtgtgtgagacggtgaactcccagcaggtttttggacagaactcctgt
ccacttatccagcctgtgctgctgtcgctcattcagcaactctctactaatctggctacc
aggactgaactcaaaatcagttacctggaggatgcagtgatgaacctggaccacggtgac
ccggtcactcgagaccacatgagctccgtcctcagccaggtccgacagaagctgttccag
ttcctgcaggcagacccccacaacgtgctgagcaagcgggcacggcggctcatgatgatg
ctgcaggggctcgtcaaccatggcatgagctaa
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integrated database retrieval system
