Polyodon spathula (Mississippi paddlefish): 121325658
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Entry
121325658 CDS
T07273
Name
(RefSeq) vacuolar protein sorting-associated protein 35
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121325658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121325658
Membrane trafficking [BR:
pspa04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
121325658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
121325658
NCBI-ProteinID:
XP_041124437
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All DBs
Position
13:39456685..39473009
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AA seq
796 aa
AA seq
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MPATQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSP
KSYYELYMAISDELHYLEVYLTDEFAKGRKVSDLYELVQYAGNIIPRLYLLITVGVVYVK
SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDDGEQPEEETTGDINDSM
DFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVEKYKQ
IVLSGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRSCAELHQHVNVKNIII
ALIDRLALFAHREDGPGIPVDIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMK
CYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPIDTYNNIVTVLKLKH
FHPLFEYFDYESRKNMSCYILSNTLDYNTEIIAQEQVDAILSLVSTLIQDQPDQPAEDPD
PEDFAEEQSLVGRFIHLLHSEDPDQQYLILNTARKHFGAGGNQRIRYTLPPLIFAAYRLA
FRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRVFLQGALAAGEIGFENHE
TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL
LKKPDQCRAVSICAHLFWSGRNTDKNGEEIHDGKRVMECLKKALKIANQCMDPSLQVQLF
IEILNRYVYFYEKENDVVTVQVLNQLIQKIREDIPNLEASEEAEQINKHFHNTLEHLRLR
KESPEADGPTYEGLVL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccactcagcagtctccgcaggatgagcaggaaaagcttctggatgaagcaatt
caggctgtgaaggtccagtcctttcagatgaagcgctgcctggacaagaacaagcttatg
gatgctctgaaacatgcctcaaacatgcttggagagctgaggacttccatgctgtcacca
aagagttattacgaactctacatggccatttctgatgaactacattacctggaggtctac
ttgactgatgagtttgctaaaggcaggaaggtgtcagatctctacgaactagttcagtat
gcaggaaacatcatcccaaggctttacttgctgatcactgtgggtgtggtgtacgtgaag
tcgtttccacagtctcgcaaggatatcctgaaggacctggtggaaatgtgcagaggagtg
cagcatccccttcgaggcctcttcctcagaaactaccttctgcagtgcaccagaaacatc
ctgccagacgacggggaacagccagaagaggagactactggtgacattaacgactcgatg
gactttgtactcctgaactttgcggagatgaacaagctgtgggttcgaatgcagcatcag
ggtcacagcagagaccgggagaagagggagcgagagcgtcaggagctgaggattcttgtt
gggaccaacctggtccgtctgagccagttagagggagttaatgtggagaaatacaaacag
attgtgctgtctgggatcttggagcaagtggtaaattgcagagatgcccttgctcaagaa
tacctcatggaatgtattattcaggtctttcctgatgagtttcatcttcagaccctcaat
cctttcctgagatcctgtgctgagctgcaccagcatgtgaatgtcaaaaatatcatcatt
gctctgattgataggcttgcattgtttgctcaccgagaggatggccctggaattccagtt
gacattaaactatttgatattttctcacaacaagtagctactgttatccagtcgagacaa
gacatgccatcagaggatgtggtttcattgcaagtgtctctcatcaatctggctatgaag
tgctatcctgaccgggtggactatgttgacaaagttctggagacaactgtggaaatcttt
aacaagctaaaccttgaacatattgcaaccagcagtgcagtatcaaaagagctgacaaga
ctgctaaagatccccatcgacacctacaacaacattgtgacggttctgaaactgaaacac
ttccatcctctgtttgagtacttcgactacgagtctcgaaagaacatgagttgctacatc
ctgagcaatactctagattacaacacggagataatcgcacaggagcaggtggatgccatc
ttgagcctagtgtcgaccctgatccaggaccagccagaccagcctgcggaggaccctgat
ccagaagactttgcggaggagcagagtctcgtgggcaggttcattcacctgcttcactcc
gaggaccctgaccagcagtatttgatcctaaacactgccaggaagcactttggtgcgggt
gggaaccagaggattcgatacacactaccccctttgatattcgcggcctatcggcttgct
ttccggtataaagagaactcaaaagtggatgataagtgggagaagaagtgccagaagatc
ttttcgttcgcccaccagaccatcagtgctcttatcaaagcagagctggctgagctgcct
ctccgggtcttcctgcagggggcgctggcagccggagagattggctttgagaatcatgag
acagtggcgtacgagttcatgtcgcaggcattttctctttatgaggatgaaatcagtgat
tctaaggcccagctggcagcaattacgctgataattggaacatttgagcggatgaaatgt
ttcagcgaagagaaccatgaacctttaaggacccagtgtgcactggctgcttcaaaactc
cttaagaagcctgatcaatgccgtgctgtcagcatctgtgcacatctcttctggtctggt
cgaaacaccgacaagaacggagaagagattcatgatggaaagagagtgatggagtgcttg
aagaaagctctaaagattgccaaccagtgcatggatccatcattgcaggtccagctgttc
attgaaatcctaaacagatacgtctacttttatgaaaaagaaaatgatgtggtgacagta
caagtcttaaaccagctcattcagaaaataagagaagatattccaaacctagaggccagc
gaagaagccgagcaaattaacaaacactttcacaacacactggagcatttgcgcctgcgg
aaagagtcccctgaggccgatggaccgacctacgaaggtcttgtcctgtaa
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