Polyodon spathula (Mississippi paddlefish): 121325675
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Entry
121325675 CDS
T07273
Name
(RefSeq) probable E3 ubiquitin-protein ligase HERC4 isoform X1
KO
K10615
E3 ubiquitin-protein ligase HERC4 [EC:
2.3.2.26
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121325675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121325675
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121325675
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
HECT type E3
121325675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
AntA
Ribosomal_L27
Motif
Other DBs
NCBI-GeneID:
121325675
NCBI-ProteinID:
XP_041124462
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All DBs
Position
13:complement(3688997..3704565)
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AA seq
1056 aa
AA seq
DB search
MLCWGNASFGQLGVGGIDEEIVTEPRSCKFFHGKKIRDVGCGRRHTVFVLEDGTVYTCGC
NDLGQLGHEKARKKPEHVGALDAQNIVAVSCGEAHTLALNDKGQVFAWGPAADGQLGLPG
TEECVRVPRTIKSLSDVQIIQVACGHQHSLALSKGSQIFTWGQNKFGQLGLSCENKSQST
PQIIRSLLGVPFAQIAAGGAHSFALTLSGAVFGWGRNKFGQLGLNDESDRYAPVLLKSLR
TQNIVYISCGEDHTAALTKEGGVFTFGAGGYGQLGHNTTSHEINPRKVFELMGSVVTQIA
CGRQHTLAFVPSCGRIYSFGLGGNGQLGTGSTCNRSSPFTVQGKWVAHNSQCPPNTNIEE
YCCVKRIYAGGDQSFAHYYTPQNSLPADDFRNSDFLRKIYTLNHEIIQRWLNHDQGRLPA
DIANEIDVVFSSASCLNGSFLSDSHPHHHKTSSKFSGVDMNSARLLFHRLIQRDYPNISQ
QVAASIEKNLLSQLPNSPPDIEALRLYLTLPECPLFSDPNNFTTLAIPFALAIVSLKETP
LKVLENWWSKLEPQIFQRIVQLYKEVVVNLLRIRKIGIPPSEQRIFNSFLHIALKILEIL
HRVNERSAQIIQYDKFYIHELHSLIDIKNDYITWIQQQMYGVELNQGLEMPDMPVTICTY
PFVFDAQAKTTLLQTDAVLQMQMAVDQAHRQNFSSFFMPVVESVNPCLMLVVRRENIVGD
TMEVLRKTKNLDYKKPLRVIFVGEEAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRL
IWFSDKTFEDIDLFNLIGVVCGLAIYNLTIVDLHFPLALYKKLLKKNPTLDDLKELKPGV
GRSMQQLLDYPDDNVEDVFCLNFTITVENFGATEVKELVPNGDDVVVNKHNRQDFANAYV
DYIFNTSVAPLFEAFYEGFHKVCGGKVLQLFQPNELQSMVIGNTNYDWKELEKSTEYKGE
YWADHPTIKLFWEVFHELPLEEKKQFLLFLSGSDRIPILGMKSLKLVIQPTGGGEQYLPV
AHTCFNLLDLPKYTDKQTLRAKLIQAIDHYEGFNLV
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgctggggtaatgcttccttcgggcagctcggggtgggtggaatcgatgaggag
atcgtaaccgagcccaggagctgcaagttcttccacggtaaaaagatccgcgatgtgggg
tgtgggcgaaggcacacagtgtttgtgctggaagacgggacagtctacacttgcggctgt
aatgatctggggcaactgggccacgagaaggcgagaaagaaaccagagcatgtcggtgcc
ttagatgctcagaacattgtggcagtttcttgcggggaagcgcacactctcgccctgaat
gacaaggggcaggtgtttgcatggggcccagcagctgatggtcagctgggcctgccgggt
acagaagagtgtgtccgagtgcccagaaccatcaagagtttgtctgatgttcagataatc
caggtggcatgtggacatcagcactcgcttgcattatctaaaggaagtcagatcttcacg
tggggacagaataaatttgggcagcttggactgagctgtgaaaacaaaagtcagtctacc
ccgcagataattcggtctttgctgggtgttccttttgcccagattgcagctggaggagcc
cacagcttcgcactcacgctatcgggagccgtgtttggctggggacgcaacaaattcgga
cagctcggcctgaatgatgagagtgacaggtatgctcctgtgctcctcaagtctctcaga
acacagaatattgtttatataagttgcggagaggatcacacagctgcacttaccaaggag
ggaggtgtgtttacatttggagctggaggatatggacagttaggtcataacactaccagt
catgagataaacccaaggaaagtctttgaactgatgggaagtgttgtcacacagatagcc
tgtggtaggcagcacactttagcatttgtcccatcgtgtggaaggatttactcttttggg
ctgggaggtaatggacaactaggaaccggctctacatgtaaccggagcagccccttcact
gtccagggaaagtgggttgcacacaatagccagtgtcctcccaatacaaatattgaagaa
tactgttgtgtgaagagaatttatgcaggtggagaccaaagctttgcacattactacact
cctcaaaattctttgccagcagatgatttccggaattcagattttctgaggaagatttat
acattaaatcatgaaattattcaaaggtggttgaaccatgatcaaggcaggcttcctgct
gatatagcaaatgagatagatgtggtgttctcttctgcaagctgtctaaatggaagcttc
ctatcggacagccatcctcaccaccataaaaccagctctaaattctcaggggttgacatg
aactcagctaggctactgtttcacaggctgatacagcgtgattatccaaacatttctcaa
caggtggctgctagcatagagaagaacctgctctctcaacttcccaactctccccctgat
atcgaagctctgcgattgtaccttacactaccagagtgcccactgttcagtgaccccaac
aacttcacaaccttagcaataccctttgctttggctattgtcagtctgaaagaaacgcca
ctgaaagtacttgaaaactggtggtctaaacttgaacctcagatcttccagaggattgtg
cagctctacaaagaagtggtggtgaacctcctgagaattcgcaagattgggatccctccc
tccgagcagaggatcttcaacagcttcctgcatatcgccttgaagatcttggagattctc
cacagggttaacgagagatcagcacaaatcatacaatatgacaagttctacattcacgaa
ttgcactctctgatagacattaaaaatgattacatcacatggatacagcaacagatgtat
ggggtggagctcaatcaaggattggagatgccagacatgcctgtcacaatttgcacatac
ccttttgtctttgatgcccaagctaagacaacactattgcaaacagatgcagtattgcaa
atgcagatggctgttgaccaggcgcacaggcagaacttctcctcattcttcatgccagtg
gtggagtctgtgaacccctgtctgatgcttgtagtgaggagggaaaacattgtaggggat
acaatggaagtgctcaggaaaaccaagaatctggattacaagaagccgctgagggtgatc
tttgttggggaggaagctgtggatgcaggaggtgttcggaaagaattctttctgctcata
atgagagagctgctggatcccaaatatggcatgtttagatattacgaagactcaaggctt
atctggttctctgacaagacctttgaagacattgacttgttcaatttgattggtgttgtc
tgtggcctggcgatatataacttgacgattgtagatctgcatttccccctggctctgtat
aaaaagcttctgaagaagaatcctacactagatgatctgaaagagctgaagcctggcgta
ggcagaagtatgcagcagctactggattatccagatgataatgtggaggacgtattctgt
ttgaatttcacaattactgtggaaaactttggtgcaacagaagtcaaagaacttgttcca
aatggtgatgatgttgttgttaacaaacacaacaggcaggactttgccaatgcctatgtg
gactacatcttcaatacatcagttgctccattatttgaagccttttatgaaggcttccac
aaagtgtgcggaggtaaagtgcttcagctgttccaacccaacgagctccagtcaatggtg
attggaaacaccaactatgactggaaagaactggagaagagtacagagtataaaggagag
tactgggcagaccatcctactataaagctcttttgggaagtgttccatgagctgccactg
gaggagaagaaacagtttcttttgtttttaagtggcagcgaccgcattcctatcctgggg
atgaagagcctcaagctggtgatccagcccactggaggtggggagcagtacctgccagtg
gctcacacctgcttcaatctcttagacctgccaaaatacacagacaagcaaaccctgaga
gccaagctaatccaggccatcgaccactatgaaggattcaatttagtgtaa
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