Polyodon spathula (Mississippi paddlefish): 121325687
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Entry
121325687 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger SWIM domain-containing protein 8-like
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121325687
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul2 complex
Target recognizing subunit
121325687
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Ribosomal_L24e
Motif
Other DBs
NCBI-GeneID:
121325687
NCBI-ProteinID:
XP_041124478
LinkDB
All DBs
Position
13:complement(8009196..8025700)
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AA seq
1882 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
ADEFQRGEQLYRMKAVKDPLQIGFHLSATVVSPQVVQAKGAYNVAVMFDRCRVSSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTQQCLTYEQIIGWWYSVRTSASHSSAGGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPQRRGELCAQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCFFSWESAY
PLPGITYCSADKKSLAFCWARTVQQQRAGRAGAVGPLEPGAGRANGQEGSAEHRGSGGNS
QLEVAVRPKEMGKHKGVPSGRGLMLGGRLGGGGGGFLLAVEDGGGIKGVYKAEVTGSASS
SSALGGKVKLVQAGKASGAGSVKHGSSKRRTSSEDSSLEPDLAELSMDDGSSLALGAEAS
NTFDLPPPPASTVPSLPTLHRDAQRKYGPVTGSATGYYPSKTSPAGTESRGGEVEVEVEV
EVEVEVEAEVEAEIEELEVGEDPAPEPDSSWDGERESGEAELLSAQALHPPREDDYQAYY
PSAASEEGGGGQHCANGEEEPDIFSGIKPLEQEERIEVLFACAEALYAHGYSNEACHLAV
ELAEDLLSNPPDLKVEQPQTKGKKSKVSTSWQTLVATGTLCKTAFLLIVLSERPELHNLA
FNTGMFSLELQRPPASTKALEVKLAYQESEVVALLKKLPLGLVEMSSIRERAEQLRDGNF
CDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTT
VSEAEHPLLCEGTRREKGDLALALMITYKDDQGKLKKILDKLLDRESQTHKPQTLSSFYS
SKPAASSQRSPSKHAAHTGGLAKHTGQAVGGGSGAAQGVASGGAANQQAGLTSMVQGPTG
ENYSSREQQDGVPLSSVELQSEAPLFKPEGRVPSRLALGTRGAYSGRCWGSPVRQKKKHT
GMASIDSSAPETTSDSSPTLSRRPLRGGWAAASWGRGQDSDSISSSSSDSLGSSSSSGSR
RAGGGARAKSADSSRYKGRRPECHVPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIF
THPSASGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSA
ALNILVECWDGHLTPPEVASLADRASRARDLNMVRAAAELALSCLPHAHALNPNEIQRAL
VQCKEQDNVMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTMVGGAGAQREGQGG
CGANGWAGRPRAALGETWTSGAPLETPGATAVTVSTAAVVPVISVGSTLYQQHAIAGSAM
GHPHTQGLHPYTTIQTHLSSICTPQYLGHPLQHVPRPAVFPVSGGAYPQVVHPAFMGAQY
PFSVATGPHPHPPMAATTVSFPGVPVPSMTQIAVHPYHSEAGLPLSTTVAVGGIHAGSSL
PGLAPQPAPFPSEEEQHNQPVSQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPP
YTEDVKWLLGLAARLGVNYVYQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRMP
AFHQLVQRCQQAYLQYIHHRLIHLTLADYDDFVNIIRSARSAFCLTPVGMMQFNDVLQNL
KRGKQTKELWQRISLEMATFTP
NT seq
5649 nt
NT seq
+upstream
nt +downstream
nt
atggagctcatgttcgcggagtgggaggacggggaaaggttttccttcgaagactcggac
cggttcgaggaggactcgctgtgctccttcatctccgaggcggagagcctgtgtcaaaac
tggcgaggatggagaaaacagtcggcaggacccaactctcccactgtcaaaataaaagat
ggtcaggtgatccctctggtggagctctctgctaagcaggttgcgttccacatccccttc
gaggtggtggagaaggtgtaccccccagtcccagagcagctgcagctcaggatagcctac
tggagcttcccagagaacgaggaggacatcaggctgtattcgtgtctcgctaacggcagt
gcggatgagttccagcggggggagcagctgtacaggatgaaagctgtgaaggacccgctg
cagattggtttccacctcagtgccacggtggtctctccccaggtggttcaggcgaagggt
gcgtacaacgtggctgtgatgtttgaccgctgccgcgtttcttcctgcagctgcacctgt
ggagccggagccaagtggtgcgcccatgtggtagctctgtgcctcttcaggattcacaac
gcctcggcagtgtgtctgcgcgccccggtctctgagtctctgtcccggctgcagagagac
cagctccagaagtttgctcagtacctcatcagtgagctaccacagcagatcctgcccaca
gcccagcgtctcttggacgagctgctctcctcgcagtccactgccatcaacactgtatgc
ggagcaccagaccccacagccggcccttcggcctctgatcagagcacctggtaccttgac
gagtcgaccttgagcgacaacatcaagaagactctgcacaagttttgcgggccctcgccg
gtggtgttcagtgatgtgaattccatgtacctctcctccactgagccccctgctgctgca
gagtgggcctgcctgctgaggcccctgaggggccgcgagccagagggaatctggaacctg
ctctccatcgtgagggagatgttcaagaggagagacagcaacgccgcgcccctgctggag
atactgacccagcagtgcctcacctacgagcagataatcggttggtggtacagtgtgcgc
acctccgcctctcacagcagtgccggcgggcacaccgggcgcagtaacggccagtctgag
gtggcggctcacgcctgcgccagcatgtgtgacgagatggtggtgctctggagactggcg
gtgctggaccccaccatgagcccacagagacgaggggagctgtgcgctcagctcaagcag
tggcacctcaaggtgattgagatcgtgaagcgggggcagcaccgcaagtccttggataaa
cttttccagggcttcaagccagcggtggagtcctgcttcttcagctgggagagcgcctac
cccctgcccggcatcacctactgcagcgcggacaagaagagtctggccttctgctgggcc
aggacagtgcagcagcagagggcaggcagggcaggggcagtggggcccctggagccagga
gctggcagggcaaacgggcaggagggctcagcagagcacaggggcagtggaggcaactca
cagctggaggtggcagtgcgccccaaagagatgggaaagcacaaaggggtccccagcggg
agagggctaatgctggggggccggctaggaggagggggaggagggttcttgctggctgtg
gaggacggtggtggaattaagggtgtatacaaggctgaggtcacagggtctgcttcttcg
tcttctgctctggggggcaaagtgaagctggttcaagcaggtaaggcaagtggagccggg
agtgtcaagcacgggtccagcaagcgcaggaccagcagcgaggacagctctctggagccg
gacctggctgagctcagcatggacgacgggtcaagcctggcactgggggccgaagccagc
aacacctttgacctgcctccccccccagcatcaaccgtcccctccctgcccaccctgcac
agagacgcacagcgcaagtacggccccgtgacagggagcgccacgggatactaccccagc
aagacctcgcccgcaggcacagagagcaggggaggggaggtggaggtggaggtggaggtg
gaggtggaggtggaggtggaggcggaggtggaggctgagattgaggagctggaagtgggg
gaggaccctgcccctgagcctgactcttcctgggatggagagagggagagtggggaggca
gagctgctctctgcccaggccctgcatcctccaagggaggatgattaccaggcatactac
cctagcgctgcctctgaggagggagggggggggcagcactgcgctaatggagaggaggaa
ccagacatcttctctgggatcaaaccactggagcaggaggagcggatagaggtactgttt
gcatgtgcagaggccctgtatgctcatggttacagtaacgaggcatgccacctggctgtg
gagctggctgaggatcttctatccaaccctcctgacctgaaggtggagcaaccccagacc
aagggtaaaaagagcaaggtgtcgacgagctggcagaccctggttgccacgggcacgctg
tgcaagactgccttccttctgattgtgctgagcgagcgccccgagctgcacaacctggcc
ttcaacactggcatgttctccctggagctgcagagaccccccgcctccaccaaggcactc
gaggtgaagctggcgtatcaggagtcggaggtggtggctctgctgaagaagctgcctctg
ggcctggtagagatgagttctatccgggagcgagccgagcagctccgtgatgggaacttc
tgcgactaccgacctgtcctgcctctcatgctggccagcttcatcttcgacgtgctctgc
accccggtggtctcccccaccggctctcgtcccccgagccgaaatcggaacaacgagatg
ccaggagacgaggagctggggttcgaggcagccgtcgcagcgcttggtatgaagacgaca
gtgagcgaggcggagcaccccctgctgtgtgaggggacgcgtcgggagaagggggatctg
gccctggcgctcatgatcacttacaaggacgaccagggcaagctcaagaagatccttgac
aagctgctagaccgggagagccagactcacaagccccagactctgagctctttctactcc
agcaagccggctgccagcagccagcgctccccctccaagcacgcggcacacactgggggc
ttggccaagcacacgggacaggctgtcggaggtgggtctggagccgcgcagggcgtcgcc
agtgggggggcagccaatcagcaagcagggctgaccagcatggtgcaggggcctaccgga
gagaactacagcagcagagagcagcaggatggcgtgcccctgtcctccgttgagctgcag
agcgaggcacctctcttcaagcctgagggccgggtccccagccgattggcccttgggact
cgaggggcatacagtggccgctgctggggctcccctgttcgacagaagaagaagcacaca
ggcatggctagtatcgacagcagcgcccccgaaaccacctccgacagctcccccactctc
agccgacgccccctgcgagggggttgggcagcagcctcctggggacgaggccaggacagt
gacagcatcagcagctcctcgtccgattcgctgggttcctcctcttccagcgggtcacgc
agggcagggggtggggccagagccaagagcgccgacagcagcaggtacaaggggcgtcgg
ccagagtgccacgttccgcacgtccctaaccagccctcggaggctgcagcgcacttctac
tttgagctggccaagacggtgttgatcaaggccggcggcaacagctccacctccatcttc
acacacccctccgccagcgggggccaccaggggccacaccgcaacctgcacctgtgtgcc
ttcgagatcggcctgtacgccctgggcctgcacaactttgtctcaccaaactggctctcc
aggacctactcctctcatgtctcctggatcactggccaggcgatggagatcggcagcgct
gctctcaatatcctggtggagtgctgggacggccacctcaccccccccgaggtagcctct
ctagcggaccgggcctcgcgggcacgtgacctcaacatggtgcgggccgcggcggagctg
gctctgagctgcctgcctcacgcacacgcactgaaccccaacgagatccaaagggcactg
gtgcagtgcaaggagcaggacaacgtgatgctggagaaggcatgcatggcggtggaggag
gctgcgaagggaggaggggtgtaccccgaggtccttttcgaagtcgctcaccagtggtac
tggctgtatgagcagaccatggtgggcggggcgggggcccagcgtgagggtcagggggga
tgtggggccaacggttgggccggccgtccccgggccgctctcggcgagacctggaccagc
ggagcgcctctggagacccccggggccacggcggtgacagtgagcactgcggctgtggtc
cctgtgatatcggtgggctccacgctgtaccagcagcacgccatcgcggggtctgccatg
gggcacccccacacacaggggctgcacccctacaccaccatccagacacacctgtcctcc
atctgcaccccacagtatctggggcaccccctgcagcacgtcccccggccagctgtgttc
cccgtgtcagggggagcgtacccgcaggtagtgcacccggccttcatgggggcccagtac
cccttttccgtggcgacgggcccccacccgcacccccccatggcagccaccaccgtcagc
ttcccaggtgtgcccgtcccgtccatgacacagattgctgtgcacccctaccactctgaa
gcaggactgcccctcagcaccactgtggcagtaggtggcatacacgcaggctcctctctg
cctggccttgccccccagccggcccccttcccctccgaggaggagcagcacaaccagcca
gtcagccagcagggcctgcactacctgcactctgcctacagagttgggatgctggctctg
gagatgctggggcgcagggctcacaatgatcaccccaataacttctcccgcagccccccc
tacactgaagatgtcaagtggctgctggggctggccgcgcgcctgggagtgaactatgtg
taccagttctgtgtgggggctgcgaagggtgtgctcagccctttcgtgctgcaggagatc
atcatggaggcgctgcagcggctgaatcccgcgcacatccatgcacacctgcgcatgcct
gccttccaccagcttgtgcagcgctgccagcaggcatatctgcagtatatccatcaccgg
ctgattcacctgaccctggcggactacgatgactttgtgaatatcatccgcagcgcgcgc
agtgcgttctgcctcacccccgtcggcatgatgcagttcaacgacgtgctgcagaacctc
aagaggggcaagcagaccaaagagctgtggcagcgcatctccctcgagatggcaaccttc
accccctga
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