Polyodon spathula (Mississippi paddlefish): 121325706
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Entry
121325706 CDS
T07273
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF6602
Motif
Other DBs
NCBI-GeneID:
121325706
NCBI-ProteinID:
XP_041124510
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All DBs
Position
13:complement(2735346..2770646)
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AA seq
1575 aa
AA seq
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MDSLTTKKSTNSSRSFGTSGNGVTETVTTTSRLTALPPRGSSGGSGGAGSGQRSVSSMER
KVTSHGNTSYFSSSGGGGSSKGNFSSSGSHRGQGSNSSLAYSPGSTLERKGIVGRHGGYE
ESSSGNSSPEYTRKEFGSVSGTSATRGRSQSRESEIRTRLQSASPSTRWTELDDVKRLLK
GSRSASVSPSRSSSNTLPIPKKATVETRTVTDSSQSVSGRYDTAILNSALPSYTWSSTLP
AGSSMVSGYGYQANANNLTPSSSLMTANALSSVSVQGVQNNLALSPAPLSSSLTTSSTVY
GVQNNLAHSTTPVLGISNGTHSPTVYGVQKNVSAASQGPAVSSTGVSTTTVSQSRDQIDD
VFRKDYKFLLLEKENTPSKKETELLIMAKDSGKLFTTTASNGIGSSFSDDTLKREKMMLS
SSTDTRLKAETNPHFGSSRTATKDKATYAEIRKDDDYGGGGGGGGGCCGGSCCSWWKWLL
GLLLGLLLLLGLLFGLIALANEVNKLKERVAVLEGSGRTSRLSSVTIDGADPAYSERIGA
RGAARSSLGTGVNLGSDSTDSDLQLQRTVQQLLRAELQSDTVRASLAVQGERGAPGPKGD
AGSPGVKGDAGFPGVPGTPGVIGHPGAEGPKGQKGSAGDPGSEGQAGQRGREGLPGPRGE
PGPPGFGEKGDKGSPGDAGPPGVAGVPGPMGHKGLMGSPGPSGTAGSPGLQGFRGETGLP
GPKGDKGSIGPAGPKGDQGEKGPRGSSGDTGLRGLPGPHGEAGAKGSAGPPGADGHKGPR
GDQGPIGLPGIRGPSGPPGDPGLPGLSGSQGPPGLPGNPGVPGSKGEAGEPGKIINAEGS
KAVVVPGPPGPAGPPGPSGPIGPSGLPGPIGPAGNPGHPGSKGSRGDRGLPGEPGISVET
SRSVSSTKFQQEPGSFNVQGPPGPPGPPGPPGHGVPGPPGPRGDPGIGQPGMPGAKGEPG
SFVPNSGTFFAGPPGPPGFPGPKGSEGEQGPRGYPGEPGQPGLPGSPGGVTGDSGRGEPG
PPGSPGLPGPQGPPGQDGREGAKGDRGDAGVPGAPGIPGAAVSRGGNSRVYQGPPGPPGP
PGAPGTPGSGSPDSLPDIRQYIADYLQSDSVRNYMIGPQGPPGPPGPPAGGSVPVDDLAS
RVISYLQRTGMSVGLPGPPGPPGTPSVDAIIALLQRQEVRQYLVGPSGSSGLGSVNQQEL
ATRIINIMNTRGLQIGLPGPPGPPGPPGSTYGDISALLQNSEFRGVVGPPGPPGTPGRPG
SPGPMGPSGIATVSGTGYRLEDIKNYLQNVGFSGPPGPAGPSGPQGPPGVSGGLVSYAEN
TQKDRFRTELIQYLTSDNMRQLISGPPGPPGPRGFKGERGDSGYSRVEGGLSGTLDYTAV
AIKVSDYIKTHGLLHDVSHSVSERVGRPGAPGPPGPPGPPGPHGFKGERGDSGYSRVEGG
LSGTLDYTAVAAKVSDYIRAQGLLQDVSYSVSERVGHPGHPGPPGPPGPPGYSRVIGAYG
NVTADLMQFFRTYGTIPGPVGPKGDRGFPGHKGDRGEIGLRGQTGLPGLPGIQGEKGEKG
DQILVGRRKRRSIGV
NT seq
4728 nt
NT seq
+upstream
nt +downstream
nt
atggacagcttaacaacaaaaaagagtacaaattcctctaggagttttgggacatccggc
aacggtgtaacagaaactgtgaccaccactagcaggctgacagccttacctcccaggggc
agtagtgggggcagcggcggcgcaggcagcgggcagaggagcgtctcttccatggaaaga
aaagtcacctcacacggcaacactagctatttctcgtcatctggcgggggtggcagctca
aaggggaatttcagctcctctgggtctcatcgaggccagggctccaactcatcgctcgcc
tactcccctggctccaccctagagaggaagggcatcgtcggccgccatggaggatatgaa
gagagttcaagtgggaactcttcaccggagtacacaaggaaagaatttggttcagtgtca
ggaacctcagccactagagggagaagtcaaagcagagaaagtgaaataagaacaagattg
cagagtgcctcaccatccaccaggtggacagagctggacgatgtcaagaggctgctgaag
gggagtcgctctgccagcgtgagtccctcacgctcatcatccaacaccctgcccatccct
aagaaagccactgtggaaacaaggaccgtgactgacagttctcagtccgtttcaggacga
tatgacacagctatcctgaactctgctctaccttcctacacatggagctccacactccct
gcagggtcttcaatggtcagtgggtatggctaccaagccaacgccaacaacctgactccc
agctcctccctcatgactgcaaatgcactttcctccgtgtctgtgcaaggagtccagaat
aacctggctttgagcccggctccattgagcagcagtctaaccacaagctccacagtgtat
ggtgttcagaataacctggctcacagtaccacccctgtactgggcatctccaatggtacc
cacagccccacagtgtatggggttcagaagaatgtttccgcagcctctcaaggaccggct
gtgtctagcacaggagtttccaccactacagtctcacaaagcagagatcagatcgacgat
gtgttccggaaagactacaagttcctgctgctggagaaggagaacacgcccagcaagaag
gagacagagctgctcatcatggcaaaggacagtggcaagctctttaccaccaccgccagc
aacggaatcggcagctccttttctgatgacactctaaagagagagaagatgatgctgtcc
agctctacggatactaggctgaaagctgaaacaaatccacactttgggtcttccagaaca
gcaacaaaagacaaggcgacttatgcagagattcgcaaggacgatgattacggagggggt
ggtggcggtggagggggttgctgtggcggatcgtgctgcagctggtggaagtggctgctg
ggattgttactggggctgcttcttctcctggggttactgttcggactcatcgccctggcg
aatgaagtgaataaactgaaggaacgcgtggcggttctggagggctctggtcggaccagc
cggctctcctccgtcaccatcgatggagcagacccagcctactctgagcgaattggagcg
agaggggctgcgagaagcagcctgggcacgggggtgaacctgggctcagattccacagac
tcggacctccagctacaacgcacagtgcagcagctgctgagagcagagctacagtctgat
acagtccgagcttcactcgcggttcagggtgaaaggggagcaccagggcctaaaggggat
gctggttctccaggtgtgaaaggagatgcaggtttcccaggggtgcctggtactccagga
gtgattggacacccaggagcagaaggacccaaaggacagaagggcagcgcaggtgatccg
ggatctgaaggtcaggcgggacagagaggacgagaaggcttgcctggaccgcggggcgaa
cccggaccccctggttttggagagaagggagacaaaggcagcccaggtgatgcaggacct
ccaggggttgcaggggtccctgggccaatgggacacaaaggtttaatgggcagtccagga
ccttcaggcactgcaggctctcctggtctgcaagggttccgaggagagacggggctgccc
ggtccgaaaggtgataaaggatcaattggaccagcaggaccaaaaggtgatcagggggag
aaaggacctcgtggatcttcaggtgacacaggcttgcgcgggttgccaggtccccatgga
gaggccggagctaaagggtctgcaggtcctcctggtgcagacggacacaaaggccccaga
ggtgaccaaggaccgattggattgccagggatcagaggaccatccggtcccccaggagat
cctggtctgccagggcttagtggatcacagggaccgccaggtcttccaggcaatccaggt
gtacctggatccaaaggtgaagcaggagagccaggcaagatcatcaatgcagagggatcc
aaggctgtggttgtgcctggcccaccaggaccagcaggacctcccggcccatccggcccc
attggaccttccggactcccaggtcctattggtcccgctggaaatccaggacatccaggc
tcaaagggatcccgaggagacaggggtctgccaggtgaaccaggtatctccgtggagact
tccagatcagtcagctctactaaatttcaacaggagcctggaagtttcaatgttcaagga
ccgccaggcccgcccggcccaccaggacctccaggtcatggagttccaggtcctcctggc
cccagaggagatccaggtattggccaaccaggaatgccgggtgccaaaggagaaccaggg
agctttgtgcccaattcaggaacattctttgcaggacctcctgggccacctggatttccc
gggcccaaagggtcagagggtgaacaaggaccaagaggatacccaggtgagccaggccag
ccaggtctgccaggaagtcccggtggtgttactggtgattctggaagaggcgaaccaggt
ccacctggatcaccagggctaccaggtccacaaggcccaccaggccaagacggtcgagaa
ggtgctaagggagacagaggggatgctggagtcccaggtgctcctggaattccaggggca
gcggtatcaagaggtggtaactcacgtgtttatcaaggcccccctggccctccagggccc
cccggagccccgggtactcctggatctggatctccagactcactacctgacattcgccag
tacattgctgattatcttcagagtgattctgtcagaaactacatgattggaccccaagga
ccacccgggccaccaggaccacctgcaggtggcagtgtgccggtagatgatctggcgagc
cgtgtcatcagctacctgcaacgtactggcatgagcgttggtcttcctggccctcctggt
ccgcctggaacaccatcagttgatgctattatagccctgttgcagagacaggaagtgagg
cagtatcttgtggggccttcaggatcgagtgggcttggttctgtcaaccagcaggagttg
gccactcgtatcatcaacatcatgaacactaggggtctgcaaattggtttgccagggccc
ccaggacctccaggacccccggggtctacctatggggacatatcggcactgctgcaaaac
tcagagtttcgaggagttgttgggccaccagggccccctggaacaccaggaagaccgggc
tctcctgggccaatgggcccctctggaattgccactgtcagtggaacaggttacaggctg
gaagacatcaaaaactacctgcagaatgtaggtttcagtggtcctcctggtccagcaggc
ccatccggtccccaggggcctccaggggtgtctggaggactggtctcctacgctgagaac
acacagaaggaccgcttccgcaccgagctcatccagtacctcaccagtgacaatatgcgg
cagttgatatcagggccgccgggccccccagggcctcgtggatttaaaggagagcgtggt
gactccgggtacagcagagtagagggagggctgagcggaacactggattacactgctgtg
gcaattaaagtatcagactacataaagacccatggtctgctgcacgatgtctctcacagt
gtgtctgagcgagtgggacgcccaggagctccgggccccccaggtcccccaggcccgcca
gggcctcatggatttaaaggagagcgtggtgactctgggtacagcagagtagaggggggg
ctgagcggaacactggattacactgccgtggcagcaaaggtatcggactacataagggcc
cagggtctgctgcaggatgtctcttacagtgtgtctgagagagtgggacacccaggacac
ccgggacccccgggaccccctggacctccagggtacagccgtgtcatcggcgcatacggg
aacgtcacggctgatctcatgcagttcttcagaacttacggtacaattccaggacctgtg
ggtccaaagggagatagaggattcccaggacacaaaggggacagaggtgaaataggactc
cgagggcagacaggactgccaggattaccaggaatccagggagagaaaggtgaaaaaggg
gaccaaatactcgttggacggaggaagaggaggagcattggagtctga
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