Polyodon spathula (Mississippi paddlefish): 121325778
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Entry
121325778 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: structural maintenance of chromosomes protein 3-like
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04110
Cell cycle
pspa04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121325778
04114 Oocyte meiosis
121325778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121325778
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pspa00535
]
121325778
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
121325778
Meiosis-specific proteins
Cohesin complex and associated proteins
121325778
Proteoglycans [BR:
pspa00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121325778
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_15
AAA_21
AAA_23
AAA_29
OmpH
Baculo_PEP_C
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
121325778
NCBI-ProteinID:
XP_041124711
LinkDB
All DBs
Position
13:complement(1906823..1921679)
Genome browser
AA seq
1217 aa
AA seq
DB search
MYIKQVIIQGFRSYRDQTVVDPFSPKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMK
ETEGKREKINELLKYIEERLHTLEDEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
ELSSKRETCGDKSRQLRDAQQDARDKAEDTERHVREMKAKISAMKEEKEQLSAERQEQIK
QRTKLELKTKDLQDELAGNSEQRKRLLKERLKLLEKIEEKQKELQETEPKFNAVKEKEEK
GIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAITDKKRQIAAIHKDL
EDTEANKEKNLEQYSKLDQDLNEVKTRVEELDKKYYEVKNKKDELQSERNYLWREENAEQ
QALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLEHFRRKGINQHVINGYHGIVMNNF
ECEPAFYTCVEVTAGTRLFYHIVETDEVSTKILTEFNKMNLPGEVTFLPLSKLDVRDTAY
PETNDAIPMISKLRYIPKFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSH
RGALTGGYYDARKSRLELQKDVRKAEEELTALEAKLNENLRRNIERINNEIDQLMNQMQQ
IETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAE
LGTDLLSQLSLEDQRRVDALNDEIRQLQQDNRQLLNERIKLEGIITRVETYLNENLRKRL
DQVEQELNELRETEGGTVLTATTSELEGINKRVKDTLARSEDLDILIDKTEIEIKDLQKS
MERWKNIEKDQNDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTL
TLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGHKSIMELMNV
LELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDIEGGQSQDEGEGGGDSERG
SGSQSTVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFY
LFDEIDQALDAQHRKAVSDMIVELAEHAQFITTTFRPELLESADKFYGVNYFNXVSHIDV
ISAEQAKDFVEDDTTHG
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtacattaaacaggtaattatacagggattccgaagttacagggaccaaactgttgtt
gatccattcagccctaaacataacgttattgttggtcgaaatggatctggaaaaagtaac
tttttctatgccatccagtttgtactcagcgatgagttcagtcaccttcgtcctgaacag
aggctggcattgctgcatgaaggaactggtcctcgtgtcatttctgcttttgtggaaatc
atatttgacaattctgacaacaggttacctattgacaaagaagaagtctctctacgacgt
gtcattggcgctaaaaaagatcaatactttttagacaaaaaaatggtgacgaaaaacgat
gtcatgaatctccttgagagtgctgggttttcccgcagtaatccttactatattgtaaag
caaggaaagatcaatcaaatggccacagcccccgactcccagcgactgaaattgctaaga
gaagtagcaggtaccagggtgtatgatgaacgcaaagaagagagtatatccctcatgaag
gaaacagagggaaaaagagagaagattaacgagctgctaaagtacattgaagagcgtttg
catacactggaagatgagaaggaggaattggcccagtaccagaaatgggataaaatgaga
agagctctcgagtacactatctataaccaagagctgaatgaaacccgtgccaaacttgat
gagctatcatctaaacgagaaacctgtggagataaatcaagacaactgcgtgatgctcaa
caggatgctcgagacaaagcggaggacactgagcgtcatgttcgagaaatgaaagccaaa
atctctgcaatgaaggaagagaaggagcagttgagtgctgaaagacaggagcagattaaa
cagaggaccaaactggagttgaagaccaaagatctgcaggatgaacttgctggaaacagt
gagcaaaggaaacgattactgaaagaaaggcttaagctgcttgagaagatcgaagaaaag
cagaaagagctccaggaaacggagcccaagtttaatgctgttaaagagaaggaagaaaaa
ggaatcgcaagattggcacaggcaacacaagagagaacagatctatatgcaaaacagggc
cgtggcagccagttcacttccaaggaggaaagagacaagtggattaaaaaagaattaaaa
tccctcgatcaggccattaccgataagaagcgtcaaattgcagctattcacaaagacttg
gaagacacagaggccaacaaagagaaaaatctggaacagtacagtaaattggatcaggat
cttaatgaggtaaagactcgtgtagaggagctggacaagaagtactatgaagtgaaaaac
aaaaaagatgaactacaaagtgagagaaactatctgtggagagaggaaaatgctgagcag
caagctcttgctgccaaacgagaggatttggaaaagaaacaacagctgctgagagccgca
actggaaaggctattttgaatggtatagacagcataaacaaagtgctggaacactttcgc
agaaagggcatcaaccagcatgtcataaatggctatcacggaattgtcatgaataatttt
gagtgtgaacctgcattctacacctgcgttgaagtcactgcagggacaaggctgttttat
cacattgtggagacagatgaagtcagtaccaaaatcttgacggagtttaataaaatgaat
ctgcctggtgaggtgactttcctgcctcttagtaaactggatgtaagagatacagcatat
ccagaaaccaatgatgctattccgatgatcagcaaattgcgctatatcccaaaatttgac
aaggctttcaaacatgtctttggaaagacacttatttgccgcagcatggaagtgtctacc
cagctagccagggctttcaccatggactgtattacacttgaaggtgaccaggtaagccat
cgaggtgctttgactggaggttattatgacgctaggaagtccagactggaacttcaaaag
gatgtacgaaaggctgaggaggaactaacagcgctggaagccaaactcaatgaaaaccta
cgaagaaacattgaaaggatcaataatgaaattgaccagctaatgaaccagatgcagcag
atagagacacagcagaggaagttcaaggcgtctcgggacagtatcctctctgagatgaaa
atgctgaaggagaagaggcagcagtcagagaaaacttttatgcccaagcaacgtagcttg
cagagcttggaggcgagtcttcacgccatggagtcaactcgagaatcactgaaagcagag
ctgggaactgatttgctgtctcaactgagtctggaggatcagagacgagtcgatgcactc
aacgatgaaattcgacagctgcagcaggacaacaggcagttgttaaatgaaagaataaaa
ctggaaggtataataaccagagtggagacttatctcaatgaaaatctgaggaaacgtttg
gaccaagttgaacaggaactaaatgagttaagagagacagagggtggcacggttcttact
gccaccacatcggaattggaaggtattaacaaacgagtgaaggacactttggcacgttca
gaagacctggacatacttattgacaagacagaaattgagatcaaagatcttcagaagagc
atggagcgctggaagaacatagagaaagatcagaatgatgccattaatcatgataccaaa
gagctggagaagatgaccaaccggcaggggatgttgttgaagaagaaggaggagtgcatg
aagaagattagagaactaggctccctccctcaggaggccttcgagaaataccagaccctc
actttaaaacagttgtttcgtaaactggagcagtgcaacactgaacttaagaagtacagc
catgtcaataagaaagccttggaccagtttgttaacttctcagagcagaaggagaagctg
ataaagagacaggaggagctggatcgaggccataagtccattatggagctgatgaatgtt
cttgagcttagaaaatatgaggccatacagctcactttcaaacaagtgtcaaagaatttc
agtgaggtatttcagaagttggttccaggtgggaaagctactcttgtgatgaagaaagga
gacatagagggtggacagtcccaggatgaaggggaaggtggaggggacagtgagagaggt
tcaggctcacaaagcactgttccatctgtagaccagtttacaggagtaggaatccgggtg
tcatttacaggaaagcagggagaaatgcgggaaatgcagcagctctctggaggacagaag
tccttggtggctcttgctcttatctttgccattcagaaatgtgacccagctcccttttac
ctgtttgatgaaattgaccaggccctggatgctcaacacagaaaggctgtatctgatatg
attgtggaattggcagagcatgctcagtttatcactacaacattcagacctgaacttctg
gagtctgcggataaattctatggagtgaattatttcaattaggttagtcatattgatgtg
atctcagcagaacaagccaaggactttgtggaggatgacaccacccacggataa
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