Polyodon spathula (Mississippi paddlefish): 121325823
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Entry
121325823 CDS
T07273
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121325823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pspa03021
]
121325823
03036 Chromosome and associated proteins [BR:
pspa03036
]
121325823
Transcription machinery [BR:
pspa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121325823
Coactivators
SAGA/TFTC/STAGA complex
121325823
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121325823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
121325823
NCBI-ProteinID:
XP_041124844
LinkDB
All DBs
Position
13:32200206..32280940
Genome browser
AA seq
1131 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESELTGQSNPAAPNTEIRSTAAAGAANHHLGR
MLPVQVGTILQQQQQQQQQQGQHKAVLNQEPSCKALSSGKTVIPSSLSSIPPFEGASITS
GTGVNANSSGLQSHGASNITALAAPGLTLPPPLVSINPANRSSVLGLAGATTTGAAATDP
LKNHIASTIRTAPPGIQSLNGNGGVVVNSPASVHFSTGGGTVQLLNNVVNSVASTSSTVN
SNLTVASSVNTTAFSATQTVFPAGQADRAGTPTIALQRPPSSHITNIAQNGNGTATSTLI
QSGARAGTPAAAGTQLVNHKSADASGIPKTDSPAQSKIVMPSQPCVVNSLMNPTTSAPVM
NPPTSQPHSSIANSVPAVSSAVSLNAVAKPATVNIVGPPVGAPVGVVRPGTPSPSQVMPT
PAHPQQPRPGVSAPQQRLVAPQLIVRPPQQTTIQLPSGFTIPQGMVLVRTETGQLVMVPQ
QALAQAQAHAQAQAQAQAQAQAQAQAQAQAQAQNSISPRPSAPTSGPTFRLATTQLSVAP
PTIRPGHPVQTKIVQPPVTPVSAPSNPVLQASLSPAPASKPSTASVVAVTAAAGSAPQQP
VTVITGGQNPPQAQPQPQPQPAPQPLPAQPAAQIPGATPGIPGSPAAGVSVISQEMQENV
KKCKNFLATLIKLASHNSPSPETSRNVKALVQDLLDAKIEPEEFTNRLQTELKSSPQPYL
VPFLKKSLPALRLSLLNSQQSLIQTQQPAQLQQAKPTPSSQPVSLSTGTVPTIAGGPTVK
ISQPNTTTTTSLPNVLQHTQVGVHSHSSPLTIKRQPGLQTTPRMPMVITQSIRTQGTVGK
APVIQASKGPGGFAVQVSANQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARILAT
NSDLVGTQIRSCKDEAFIPPGLLHKRILETAKKFGVTEVPVDAVNFISHATQERLRTVLE
KVTIIAQHRMETCKDDEWLEQGSDVRSQLKFFEQLERLEKQRKDEQEREILLKAAKSRSR
QEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDSPGAAAAGAEVSGS
SSGSPSGSAASSSRQYSRQRITRVNLRDFIFYMEEERETSHSLLLYRALLK
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgcttccgaccctctggaagatatgctgttctccgaggtggacgaaaaagcc
gttagcgatcttgtgggctcgctagagtcagaactaactggccaaagcaacccagcagct
cccaacacagaaatcaggagcactgcagccgccggcgccgctaaccaccacttaggaaga
atgctacctgtccaagtgggtactatactacagcaacagcagcaacaacaacaacaacaa
ggacagcataaagctgtgctaaaccaggagcccagctgcaaagcacttagctccgggaaa
actgtgataccgtcttctcttagttccattccgccctttgaaggggcttccatcacttct
gggaccggggtaaacgcgaatagtagcggtttacaatcacatggagcatctaatattaca
gcactggctgcacctggtttaactttgccacctccgctggtgagcattaaccctgccaac
aggagctctgttttggggctggcaggagcaacgacgacaggagcagcagcaacagatcct
ttgaaaaaccacattgcttcaaccataaggactgctccaccagggatacagagtttaaac
gggaacggaggagttgtcgtgaactctcctgccagtgtacatttttctaccggtggcggt
acagtacagctccttaataacgtagtaaactccgttgctagtaccagtagtaccgttaat
tctaatttgactgtggcatctagtgtaaatactaccgcttttagtgcaacacaaactgtg
ttccctgctggtcaagccgaccgggcaggcactcctacaatagcgctacagagacctcct
tcaagccacataacgaacattgcacagaacgggaatggtactgcaacttctactttgatc
cagtctggtgcaagggcaggtacccctgcagctgcaggaacgcaactagtaaaccataag
agtgcggatgccagcggtattcctaaaacagactctccagcacagtctaagatcgttatg
ccaagtcaaccgtgtgttgtgaattcattaatgaaccctaccacttctgcacctgtaatg
aacccacccacgagtcagccacacagttcaatagcgaactccgtgcccgcagtaagcagt
gctgtttctctgaacgccgtggctaagcctgctactgtgaacattgtaggaccgccagtt
ggagcccctgtcggagtggtcagacctggtaccccgtcaccttcacaggttatgcccact
cctgctcatcctcagcagcctcgacccggagtgagtgcacctcagcagaggcttgtagct
ccacagctgattgtcagaccacctcaacagaccactattcagctgccttctggatttact
attccacagggaatggttctggtacggacggagactggtcagctggtcatggttcctcag
caagcgctggcccaggcccaggctcatgctcaagcccaagctcaagctcaggctcaagct
caggctcaagctcaggctcaagctcaggctcaggctcaaaacagcatctctcccagacca
tctgcacccaccagcggacccaccttccgactggcaacaacgcagctgtctgtggcacct
ccaacaatcagaccaggacatccagtgcaaactaaaattgttcagccccccgtgacgcct
gttagcgctccttctaatcctgtcttgcaagcgtccttatctccagcacctgcatcaaaa
ccatctacagcatcagtggtagccgtgactgcagcagcaggaagtgcaccccagcagcca
gtgactgtgatcacaggagggcagaatccaccccaggcccagccccagccccagccccag
ccagccccacagcctcttccagcccagcctgcagcgcaaataccaggagcaaccccggga
atccctggctctcccgctgccggagtgtccgtcatttcccaggaaatgcaagaaaatgtg
aagaagtgcaagaacttcttagccaccctaatcaaacttgcatctcataattcaccatct
ccagaaacctcccggaatgtgaaggcacttgtgcaagatttgctggatgcaaaaattgaa
cctgaagaattcaccaatcgactgcagacagagttaaaatcatctccacaaccctacttg
gttcctttccttaagaaaagtctacctgccttgaggctgtcgctgttgaatagtcagcaa
tctctgatacaaacccaacagcctgcacagcttcagcaagcaaaaccaacaccgagttcc
cagcctgtttccctgtctacggggactgttcccaccattgcaggaggcccaactgtgaag
ataagtcagccgaacaccaccaccaccaccagtttgccaaatgttttgcaacacacgcaa
gtgggtgtgcacagccacagttctcctctgactattaaaaggcaacctggtctacaaaca
actccaagaatgccgatggtgatcacacagagcatcagaacccaaggcacagtagggaag
gcaccagtaatacaagcaagtaaaggtcctgggggctttgctgttcaggtctctgcaaat
cagaaaaacaagctcaatgaccctgggggtggttctttcagggatgatgatgatattaat
gatgtggcttctatggcgggagttaatctgaatgaggaaagtgcccgaatcctggcgacg
aactctgatttggtgggaacccaaatccgatcgtgtaaagatgaagcgttcattcctcct
gggctgttacataaacgaatactagaaacagctaaaaagtttggagttactgaagtacca
gttgatgctgtcaacttcatctcccatgcaacacaggaaaggttaagaacagtgctggag
aaagtgactataattgcacaacacagaatggagacgtgtaaagatgacgaatggcttgaa
caaggctcagacgtccggtcgcagttgaagttcttcgagcagttggaacggcttgaaaag
cagaggaaagatgagcaggagagggagatcttactgaaagctgctaagagtcgctcaagg
caagaagacccagagcaagctcgactgaaacaaaaagctaaggagatgcaacaacaagag
cttgcgcagatgaggcaaagagatgctaacttgactgcactggcagctattggtccacga
aagaaacgtaagcttgattcccctggagctgctgcagcaggtgctgaggtttcaggaagt
tcaagtgggtctccatctgggtcggctgcatcttcttcccgacagtactcaaggcagagg
atcactcgagtaaacctcagggacttcatcttctatatggaagaggaacgagaaacaagc
cactctctcctgctctacagggctctgctgaaatag
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integrated database retrieval system
