Polyodon spathula (Mississippi paddlefish): 121325948
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Entry
121325948 CDS
T07273
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3-like
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121325948
Enzymes [BR:
pspa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121325948
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121325948
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-rbx1
EIF3I
zf-RING_5
Beta-prop_THOC3
WDR55
zf-C3HC4_3
Beta-prop_WDR5
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_1st
zf-RING_Vps41
CALCOCO1
zf-ANAPC11
Beta-prop_WDR75_1st
zf-RING_11
zf-C3HC4_4
WD40_2
WD40_Prp19
Beta-prop_EIPR1
Myo5a
DUF7837
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Motif
Other DBs
NCBI-GeneID:
121325948
NCBI-ProteinID:
XP_041124970
LinkDB
All DBs
Position
13:complement(33437917..33452784)
Genome browser
AA seq
722 aa
AA seq
DB search
MEEMEIDLQLGGTETVSHQVEQGGLSGVFPIIIPESESDIEEEEWPVPILRGLLQGGTSS
EVEPARQGAVTRRRRATRAQSQATRTSARSRWPLTAGSARQASAMDSIFQPSRSQTVQLP
YTGSLVHIVGDSATVSVTDPGSGNTTEQSDSEESLTDLEEAAAPAAPVVPAVSLTTGLAV
PAEGRAETVGSVQRDVEGPLQDSESSSPVKISGPKEVSTASIAPPNGPGEEEGDTCPICF
EPWTNAGEHRLSTLRCGHLFGFTCIDRWLRGQGGKCPQCNKKAKRTDVVVLYARTLKALD
TNEQERMKSLLEREQALRRKSELESAQCRLQLQVLTDECGRLRKQLQELKVLMSQQGCSS
SQSNGSRTTLSQGTSQAQGGRYTFNKAVMVSQTGNCRVLSYCEPLSCLLASQPSPQATLV
PGCGVKKISAVSMKACQYVPIHAKQIRGLAFNNQADSLMLSAALDSTVKLTSLLTNTVVQ
TYNTGRPVWSCCWCLDDPNYFYAGLNSGSILVYDTRDTSTYVQELAPLGSRCPVASLSYL
PRAASAAFPCGGLIAGTLEGGSFWERKDGTTYRAHLLPLETGGCTDIQVEPASRHCLVTY
RPGKSNPSLRCVLMELSRGRQIDSSEDPPCTCHPIQSFSAGSSCKLLTKNAVFESPARDG
AMLVCAGDEASSSAMLWDAGRGSLIQKLQADQPVLDISPFEVNQNSYLALLTEKMVKIYK
WD
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggaagagatggagatagacctgcagctggggggaacagagacggtgtcacaccaagtg
gagcagggtggcttgagcggtgtgttcccgataatcattcctgaatcggagagtgacata
gaggaagaggagtggcccgtgcccattctgagggggctgctgcaggggggtaccagctct
gaggtcgagccagcacgacagggggctgtaaccaggaggaggcgggcgacgcgggcgcaa
agccaggctactcgcacctctgcaaggtccaggtggcccctcacagcaggaagtgccagg
caggcctccgcgatggacagcatcttccagccaagccgcagccagactgtgcagctgcct
tacaccggctcactggtgcacattgtgggggactctgccacagtgagtgtcactgacccg
ggttcagggaacaccacggagcagagtgactctgaggagagcctgactgacctggaggag
gctgcagcgcctgcagcccccgtcgtgcccgctgtctctctcaccacaggtcttgcagtg
ccagcagagggccgtgctgagactgtagggtctgtgcagagggatgtagaaggtcctctc
caagactcggagtcaagctctccagtgaaaatttctgggccgaaagaggtgtccactgct
tccatagcaccccccaatggtcctggggaggaagagggagatacctgtcctatctgtttc
gaaccctggaccaatgcaggggagcaccgcctctccaccctgcgctgtgggcatctcttc
gggttcacctgcatcgaccgctggctccgggggcaggggggcaagtgtccgcagtgcaat
aagaaggcgaagcgcacggatgttgtggtgttgtacgctcgcacgttgaaggccctcgat
accaatgagcaggagaggatgaaaagccttctggagcgcgagcaagccctgcggaggaag
tctgagctggagtcggcacagtgcaggctgcagctccaggtgctgacagacgagtgcggg
cgactgcgcaagcaactgcaggagttgaaggtgttgatgtcccagcaaggctgtagttcc
tctcaatcgaatggctcccgcaccaccctctcgcagggcaccagccaggcccaggggggc
cgctacactttcaacaaggctgtgatggtgtctcagacagggaactgccgcgtgctttcc
tactgcgagcctctcagctgcctgctggcctcccaaccctccccacaagcaacactggta
ccaggttgcggtgttaagaagatcagtgcagtcagcatgaaggcgtgtcagtacgtacca
atccacgccaagcagatccgtggcctggccttcaacaaccaggcagacagtctaatgctc
tctgcagcgctggacagcaccgtcaaactgaccagcctcctgaccaacacggtggtgcag
acctacaacacgggccgtcccgtgtggagctgctgctggtgtctggatgatcccaattac
ttctacgctgggctgaacagcggctctatcctggtatacgacacacgggacaccagcaca
tatgtgcaagagctcgctccgcttgggtccaggtgcccggtggcctccctgtcctatctc
cctcgcgccgcctctgctgctttcccctgtggggggttgattgctgggaccctggagggg
ggcagcttctgggagcggaaggatgggacgacttacagagcccacctcctcccgctggag
acgggtggctgcacagacatccaggtggaaccagccagccggcactgtctcgttacctac
aggccaggcaagtcaaacccctctctgcgatgtgtactgatggagctcagcagggggcgc
cagatagactcgtctgaggaccctccgtgtacctgccaccccatccagtccttcagcgcc
ggctcctcctgcaagctgctcaccaaaaacgctgtgtttgagagcccggcacgcgacggg
gccatgctggtgtgtgcaggagacgaggcttccagctctgctatgctgtgggatgccggt
cgtggttctctgattcagaaactgcaggctgaccagccagtactggacatcagccccttc
gaggtgaaccagaacagctacctggccttgctcacggagaagatggtgaagatctacaag
tgggattga
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