KEGG   Polyodon spathula (Mississippi paddlefish): 121326040
Entry
121326040         CDS       T07273                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pspa03036]
    121326040
   03400 DNA repair and recombination proteins [BR:pspa03400]
    121326040
Chromosome and associated proteins [BR:pspa03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    121326040
DNA repair and recombination proteins [BR:pspa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     121326040
SSDB
Motif
Pfam: MMS19_C MMS19_N TOR1L1_N HEAT_DAAF5 HEAT_2 INTS7_N Sec7-like_HUS
Other DBs
NCBI-GeneID: 121326040
NCBI-ProteinID: XP_041125118
LinkDB
Position
13:complement(9006935..9020974)
AA seq 1023 aa
MAGDGALLLGLVEEFVTGLQDSKAADIATGVKKGQFAVLELVEALGSSLTSSEPRTRGRG
IQLLSQVLQQCCTSLTEKEVQVLTAFYENRLKDHYVITPHVLQGLKALTLCPALPTGLAV
SILKSLFQDVHVQSLMQTDRSCVYNILINLMESREEELKGLGADFVFGFVQAIDGEKDPR
NLLLGFQIAQNILYRNYELGSFTEELFEVTSCYFPIDFYPPPNDPHGISREELILSLRAV
LAGTPRFAEFLLPLLIEKLDSDVQSSKLDSLQTLAACAAGYGHKELKEFLPSLWSSVRRE
VFQTASEKVESAGLSALRSLTACLSRSVLDSDSEDSLNTFLDLVLKDCQHHLCEPDLKLV
WPSTKLLQTAASASYRASYKITAAVVPLLLEQYNNHTQNAQRRTLVEVLQGFIQPARGSH
TKEGDENPLTGYRQPLCALVFSALTESSPALQTAAVQALTALGTQAGLLSEEDIDLAAEH
LTRLILREEEPQTCSAAMEAAASLARLHPTVFASRMVPALKREIFSEAMEECEDRPTAQS
LGVLRQRSLKALSTVSTHPSLVQETVPILLQALSISHEGSASFELEEVVSACRGLQQIAE
LAKDSDESGCYFHQTVIPHLLGLAVQASLQGGGAPNPLTEERVLSAMVPIFSTACGCLHT
QLAAHTASLVLSLFLDGDTSFLPENNVPEQFQLLKERSNGWPQTQLVCLLMACVCSLPKC
VQVPKTDRLLSELEELSCSCVHPFTYTSAAKCFAGLVNKQPAGEQLDSILMRSVKRIESG
LGSDSPNRVQVFTLLLWVSKALLLRYHPLSTTLTDKLLSLLVDRELGSLAADGVALLMND
SADVLNRACHADVRMMYRQRFFTETAPKLVLGFNCASEERKSSYLKALSHILNSLPRQVQ
ITELPSLLPLLLEALSCPDHGVQLSTLSCLHPLLLDTPQVMTSHLETLLSRLLGLTASPA
MKVRVLSLQCLKALTRLPEHVVLPSRPRMLRALAVPLDDKKRLVRREAVLARGEWFLLGS
PGR
NT seq 3072 nt   +upstreamnt  +downstreamnt
atggctggggacggagccttgctgctgggtttggtggaggaatttgtaaccggactgcag
gatagtaaagcagctgatatagcaacaggggtgaagaaaggacagtttgcagtgttagag
ctggtggaagctttggggtcaagtttaacaagctctgagcctcgaactaggggccgtggg
atccagctcctctcccaggtgctgcagcaatgctgtaccagtctgacggagaaagaagtt
caggtcctgacagctttttatgaaaacagactaaaggaccattatgtgataacacctcat
gtcttgcaggggctcaaagccctgactctgtgcccggcgctgcccactggactggccgtc
tctatcttgaagtctctctttcaggatgtccatgtgcagtctctgatgcagacagaccga
tcctgtgtttataacatcctgatcaacttgatggagtctcgtgaggaggagctaaagggt
ctgggtgcagattttgtgtttggttttgtccaagcgatagatggtgagaaggaccccagg
aacctgctgctgggtttccagattgcccaaaatattctgtacaggaactatgagctggga
agttttacagaggaactgtttgaagtgacttcttgctatttccccattgatttctatccg
cctccaaacgaccctcatggaatcagtcgagaggagctgattctgagcctgagggcagtg
ctggctggcacgcccaggttcgctgagttcctgctgccgctgctgatcgagaagctggat
tcagatgtgcagagctctaagctagactccctgcagacactggcagcctgtgccgctggc
tacggacacaaagagctgaaagaattcctgcccagcctctggtcatcagtccgcagagag
gtgttccagacagctagtgagaaggtggagagtgccggcctctctgccctgcgctccctc
acagcctgcctctctcgctccgtccttgactctgattcagaggactcgctcaacaccttc
ctagacttggttctcaaagattgccaacaccacctctgtgagccagacctgaagttggtt
tggccgagcaccaaactcctgcagactgccgccagcgcctcctacagggcgagttataaa
ataacagctgcggtggtaccgttgctgctggagcagtacaacaaccacacacagaatgct
cagcggcgcaccctggtggaagtgttgcagggtttcatccagcctgcccgggggagccac
actaaggagggagatgaaaaccctctgactggttaccggcagcccctgtgtgccctggtg
ttctcagctctcacagagtcaagccccgcactgcagaccgcagccgttcaggccttgact
gccctggggacccaggcaggcctgctttctgaggaggatattgatcttgctgctgagcac
ctgactcgactgatcctgcgggaggaggagccacagacctgctctgcagcgatggaagct
gctgcgtctctggctcgtctgcaccccaccgtcttcgcctccaggatggttccggctcta
aaacgagagatcttctcggaagcaatggaggagtgtgaggaccgccccacagctcaatcc
ctgggggttctgcggcagcgcagtctgaaggctctgtcgacggtatcaactcatcccagc
ctcgtccaggagactgtgcctatcctactgcaggccctcagcatctctcacgaaggaagt
gccagttttgagcttgaagaagtggtgtctgcttgtcggggcctacagcaaatcgcagag
cttgccaaagacagtgatgaaagcggctgctacttccaccagactgtcatcccacatctg
ctggggctggcagtgcaggcctccttacagggtggaggtgctccaaaccccctgacagag
gagagggtactgtctgctatggttcctatcttcagtactgcctgtggctgccttcacaca
cagcttgctgcccacactgcatctctggtactgtcccttttcctggatggagatacctcc
ttcttgcctgagaataacgtcccagagcaattccagctgctgaaggagcgatctaatggc
tggccacagactcagctggtgtgtctgctgatggcgtgtgtctgttcactgcctaaatgt
gtgcaagttcccaagactgaccgcctcttgagcgaattggaggagctgagctgttcctgt
gtccaccccttcacctacacatcggcagcaaagtgttttgctggactggtcaacaaacaa
ccagcaggggagcagttggactctattttgatgcgatctgtgaagaggattgagtctgga
ttgggcagtgactcgccgaacagagtgcaggttttcactctgctgctttgggtgtccaag
gcactcctcctgaggtaccacccgctgtccacaactcttactgataagctcctgtctctc
ctggtggacagagagctgggctccctggctgccgatggcgttgcccttctgatgaacgac
tcggcggatgttttaaatcgagcatgccatgctgacgtgcgcatgatgtaccggcagaga
ttcttcactgagacggcacccaaattagtcctggggttcaactgcgcctctgaagaaagg
aaatccagctacttgaaggccctgtcccacatcctcaacagcttgcccagacaggtccag
atcacagagctgccctctctcctgcccctcttattggaggcattgtcttgtccagaccat
ggtgtccagttgtctaccctgtcctgcctacaccccctccttctggacaccccgcaggtc
atgacctcacacctggagaccctcctcagccgactcctggggctgactgccagcccagct
atgaaagtacgggtcttatctctgcagtgcttgaaggcactaaccaggcttcctgagcat
gtggtgctgccgtcccgcccgcggatgctgcgtgctctggctgtgcctctggatgataag
aagcggctggtgaggagggaggcagtgcttgcgcgaggggaatggtttttgctgggaagc
ccaggaaggtga

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