Polyodon spathula (Mississippi paddlefish): 121326355
Help
Entry
121326355 CDS
T07273
Name
(RefSeq) protein SMG7-like isoform X1
KO
K14409
protein SMG7
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121326355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121326355
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
121326355
mRNA cycle factors
Common to processing body (P body) and stress granule
121326355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
121326355
NCBI-ProteinID:
XP_041125523
LinkDB
All DBs
Position
14:complement(12027233..12080923)
Genome browser
AA seq
1268 aa
AA seq
DB search
MMNLCTQYLRQAEALKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQINISAIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAVESRDEI
KTKWSVSDFVKAFIKFHGHVYLSKSLEKLNTLREKLEEQFQTLILQNAFSSQQLVHIAVI
NLFELHHLRDFSSETDHSYSQDEQLSWIQLLALFMSFLGVMCSRALLNKNREETLGECPL
PAIKVSLDWLKLRPVFRENSVNERQHIWPWLASLLNSFQPKEDDVSGASETPLPEEFELQ
GFLALRPALRYFLEFPLSISLRARNLDFFKGHQGIVVDKKGQQLRTRHQRLICLGKWVAE
NHPRLLLCRSEEDRLVFVTDIPELAIAELPENKDGPVLQEYSNAEQTSNEGSQGLKSVLS
IGKTQNCSSESGEKPVVTFKENIKPREQSRDPTRNHHPKDGMKEKDYNKGNNMANKTDLK
KDKRKSEPKKNSNEKTTELGKQNVAVQIKAQSEVRKTPVTQTPTQTSSSSQFIPIHHPGA
FPPLPSRPGFPPPGYVIPPPVAFSMNPGYTFSTGVSVPGPFLQSATHPQTGNPVQAGKQS
HIPYSQQRPSAPGALNQGPQQQQGPQQPHTAPPPQQGQPPAQLQVQTMLQQQHSPAKPVQ
QLGKSPPYPGMQQYMQTDQSNQLWNQHQAQPPIQKMPLQMTVKQPFYMQTQDPLKLFEQS
LQTIQVQQQQQVNMEKKMRQFPVEPFPQSTSDVKAQEFYWDSPYRLTDTRQMIGQQVNNE
RLVKRQQGVFRPDQDSAPRVPSFEDTKSSPLLPPDLLKSLADFEEEDLVFTKPHDFYQAL
AGPVGTAPGRNLFLPNQSRVERPSEMIAQPSSLLSLSGFSIQDNIYQNNSIFSEAYGKNM
ATSTKPEVTCSLSHQEPSLYSLFEGTPWSPSLPASSGLQQQEAQTRCVDDRPRASHPRVI
SPVQDQHIHLHPLRDRFRTAEQTARETTDHPHRRISSDTICCRDHSTPASQSPHSSNPSS
LPSSPPTHNHNSIPFSNFGPIGTPDSRDRRMADRWKMEKSAISGFGLDYLPATSSSASEN
SWHQTSTPCSTWAAQESPMEESSTVLLDSLKSIWSSSMMHPGPSALEQLLMQQKQKQQRG
HVTMNPPH
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacctatgcacacaatatttacggcaggcagaggccctgaaggcagacatgaca
gattcaaagttgggtccagcagaggtctggacatcaaggcaagcactgcaagacctttac
cagaaaatgttggtgacagacctggagtatgctctggacaagaaagtggagcaagatctc
tggaaccatgcttttaaaaatcaaataacaacactacagagtcaagcaaaaaacagggcg
aatcccaacaggagtgaagtgcaggccaatttgtcacttttccttgaggcagctagtggc
ttctacacacagttgttacaggagctatgtacagtgtttaacgtggatctgccttgtcgg
gtgaaatcttcacaacttggaataataagcaataaacagattaacatcagcgccatcgta
aagccacaacctagttcatgctcttacatctgccagcattgccttgtccacctaggggac
attgcgcgctaccgtaaccaaaccagccaggcagagtcttactacaggcatgcagctcaa
cttgtaccatcaaatggtcaaccttacaatcagctggctattttggcttcctcgaaagga
gaccacctcacaacaattttctactactgcagaagtattgcggtcaagtttccttttcca
gctgcttctaccaacctacagaaggctctgtctaaggctgttgagagccgggatgaaata
aagaccaagtggagtgtatcagactttgtcaaagcctttattaagttccacgggcatgtg
tatttgagcaagagcctagaaaaactgaacaccctgagagagaagctggaggagcaattt
cagacacttattcttcagaacgcgttcagctcacagcaacttgttcacatcgctgtaatt
aacctgtttgaacttcatcatttgcgagacttcagcagtgagactgatcatagctatagt
caggatgaacagctcagctggatccagctattggcactttttatgtctttccttggagtc
atgtgcagtcgagcactgctcaataagaatcgggaggaaacgttgggtgaatgtcctctc
ccagctatcaaggtttccttggattggctgaagcttagacctgtgtttcgtgagaattct
gtaaatgaaagacagcatatttggccatggctggcttctctcttgaacagttttcagcca
aaggaagatgatgtctctggggcctcagaaacccctctaccagaagagtttgagctgcag
gggttcttggccctcagacctgcactcaggtattttttggaattcccattgtcaatttca
cttcgtgccaggaacctggatttctttaaggggcaccaaggcattgtagtagacaagaaa
ggtcaacaactgaggacacgtcaccagagactgatctgtctaggaaaatgggtggcagaa
aatcatcccagactgcttctgtgcagaagtgaggaggatagacttgtttttgtaactgac
atcccagaactagccattgcggagctgcctgagaacaaagatggtccagtcttgcaggag
tattccaatgcagagcaaacttccaacgagggcagccaaggacttaaatcagtactttct
attgggaagacccagaactgcagttcagagagtggagagaaacctgttgtaacattcaaa
gaaaatattaagcccagggagcagtccagggatccgacaagaaaccaccatccgaaagat
gggatgaaggaaaaggactataataaaggcaataatatggcaaacaaaactgatttaaag
aaagacaagagaaagagtgaacctaagaaaaacagcaatgagaagacaacagagctagga
aagcagaacgtggcagtgcagataaaggcacaatctgaagtgaggaagactccagttact
cagactccgacacagactagcagctcctcacagttcatcccaattcaccacccaggagct
tttcctcctcttcccagcagaccaggattccctccacctggatatgttatacctccacca
gttgctttttcaatgaaccctggttacacattctcaactggggtatctgtaccaggacct
ttcctccagtctgccacccatccccagacaggtaatccggtccaagctgggaagcaatcg
cacattccctacagtcagcagaggccatcggcgccaggggctttgaatcaaggacctcag
cagcagcagggtccacagcaaccacacacagcaccaccaccacaacaggggcagcctcca
gctcagcttcaggttcagactatgttacagcaacagcattcgccagctaaaccagtgcag
cagcttgggaaaagccccccttatcctgggatgcagcagtacatgcaaactgaccagtcc
aaccagctgtggaatcagcaccaggcacagcctccaatccaaaagatgccattacagatg
actgtaaagcagccattttacatgcagactcaggatccactaaagctgtttgagcagtct
cttcaaaccatacaagtgcagcaacaacagcaggttaatatggaaaagaaaatgaggcag
ttccctgtggaaccattcccccagagcacatcggatgttaaagcacaggagttttactgg
gattctccataccgcttgactgacaccaggcagatgattggacagcaagtaaacaatgag
cgcttggtcaagaggcaacagggggtcttccgcccagaccaggacagtgcacctagggtg
ccatcctttgaggacaccaagagctcccctctcctacctcctgatctgttaaaaagttta
gctgattttgaggaggaagatctggtctttactaaacctcacgatttttaccaggccttg
gccggccctgtaggcactgctcctggaagaaatctatttttgccaaaccagtcaagggtg
gaaagaccatcagagatgatagcacagccttcatcacttctctccttgtctgggttttcg
attcaggacaacatctatcaaaataacagcattttcagtgaggcctatggtaaaaacatg
gcaaccagcacaaagccggaggtaacctgttccctgtcgcatcaggagccttcgctgtat
tccctctttgaaggaactccatggtctccatcccttcctgccagctcagggctccaacaa
caggaagcacagaccagatgtgtagatgacagacccagagcaagccatcctagagtgatt
tcccctgtccaggaccagcacatccatctgcatcccctgagagatcggtttagaacagca
gaacaaacagcccgagaaacaactgatcatccacacaggcgcatcagcagtgatacaata
tgctgccgagatcactcaacaccagcaagccagtctcctcactcctccaaccccagcagc
ttgccatcttccccaccaactcacaatcacaactccatccctttctctaacttcgggccc
atagggacccctgacagtagggataggaggatggctgatcgctggaaaatggaaaagtca
gcaattagtggatttggactggactatttgcctgctacatcttcctctgcttcggagaac
agctggcatcagactagcactccctgcagcacctgggctgcccaggaatcccctatggaa
gaatcctccacggtcctcctggacagtctgaagtcaatctggtcaagctcgatgatgcat
cccggaccttcagcgctggagcagctgctgatgcagcagaaacagaagcagcagaggggg
catgtcacaatgaacccaccacactga
DBGET
integrated database retrieval system
