Polyodon spathula (Mississippi paddlefish): 121326391
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Entry
121326391 CDS
T07273
Name
(RefSeq) nucleoporin NDC1-like isoform X1
KO
K14315
nucleoporin NDC1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121326391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121326391
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121326391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
121326391
NCBI-ProteinID:
XP_041125581
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Position
14:7242364..7251422
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AA seq
670 aa
AA seq
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MLSLRHDHWFIRKVVFWRAAASIAWSVLLLPASTAIFVLLSRISVLHPIEWITGSLNFLC
GSYVIFSIVLLCLVVLIIGFFILEFYTVVPSIPCTRIALIGKVLHPQQSIHSLVHSVLGM
LVSWCAAVMIGGRYQFLSTPCIVEESAAASSMCLNEYHLFFLLAGAFMGYSYSILYVVGN
MNYVSFPSIQQWKYLRFKGTLPLVIKHSAVQALYSVRNYCITYFFLGYIPRAWICTTMNL
QKDRTLHSLDTFTGLLDFALLYHLWISGTFLLVTWYMTWLLFRIYTTEVYCFPVQSSFSE
DAHQCLPKVLSSKQPLILKYLAFQDFALLSQNSPSRRQEVFSLSQPGGHPHNWSALSGEC
LTILSDLTQKLIAYQEAVSSNGRIKPQSVGSDKRTSSSGSSATSLIEEPTSWQTPRLSLG
PRTPGSVFLRSSVVSPFTPDLGSPFGSPAMKRLTGTLDPSSPWHGSVQSPHVMRRGPKLW
TSSLGAESPLNGSPQSGPPPVPSLGAGAQKPSIVSLWIQNRQEQVKNVLAKRVLIMYLFN
KLPEASSQALFAESQAHMWALEGLSHLVAASYTEDRFGVVQTTLSDILGTMLALQEAVDK
HFKLPHASSKPARTSGSLVDTSYKTLRFALRASLKTAIYRITTTFGEHLNAVQVSTEHRK
RLQQFLEYKE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgttatcgcttagacatgaccattggttcattaggaaggtggtattttggcgggcagca
gcaagtattgcatggtcagtattgttgttaccagcttccactgcaatatttgtacttctg
agcaggatcagtgtcttgcatcccatagaatggataaccggttcactaaactttttgtgt
ggttcctacgttattttttctattgtacttctgtgcttggtggtgctgattattggtttc
ttcattctggagttttacacagtggtgccttcgataccttgtactcggattgcactaata
ggaaaggtgcttcacccccagcagtctattcactctctggttcactctgtgttgggaatg
ctggtgtcctggtgtgcagcagtgatgataggtggacgataccagtttctttccacccct
tgcattgttgaggaaagtgctgctgctagttctatgtgcctcaatgagtaccacctcttc
tttctgttggctggtgctttcatgggttacagctacagtattctatatgttgttggcaac
atgaactatgtgtcttttccaagtatacagcaatggaagtacctgcgtttcaagggaacc
ctgcctctggtaattaagcacagtgcagtccaggcattgtattctgttcggaattactgc
atcacttatttcttcttgggttatatcccgagagcatggatatgtacaacaatgaatctt
caaaaagacaggactcttcactcactggacaccttcacaggcctacttgactttgctctt
ctctaccacttgtggataagtggaacatttctcttagtaacatggtacatgacatggctg
ctgtttagaatctacacaacagaggtgtattgttttccagtgcaatcctcattttcagag
gatgcacaccagtgccttcccaaagtcttaagcagcaaacaaccccttattttaaagtat
ttagcttttcaggattttgcattgctgtctcaaaactctccatctagaagacaagaagtt
tttagcttgagtcaacccggtggccatcctcacaactggtcagcattatcaggggaatgt
ttaactatattgagtgaccttacccagaagttgattgcttaccaagaagctgtttcgtcc
aatggaagaattaagccacagtctgttggcagtgacaagagaacttcatcttctggcagt
tcggcaacatctttaatagaggaacctacgagctggcaaacgccaagacttagcctgggt
cccagaacccctggttctgtgtttctcaggtcctctgtggtatcccctttcactcccgat
ctaggaagcccttttggttcacctgcaatgaaacgattaactgggacactggacccatct
tctccttggcatggctcagtgcaaagtccgcatgtcatgagaagaggacccaaactctgg
acctcgtctttgggtgcagagtctcccttgaatggcagcccacaatcaggacctcctcca
gtgccaagcctgggagctggggcacagaagcccagtatagtctctttgtggattcagaac
cgtcaggaacaggttaaaaatgtcctggctaaacgggtgctgataatgtatttatttaat
aagcttccagaagcctccagccaagccctttttgcagagagtcaagcacacatgtgggca
cttgaaggtctgtctcatttggtagcagcgtcctatacagaagacagatttggggttgtc
cagactacactttctgatattcttggtactatgcttgctttacaggaggcagtagataag
catttcaagttacctcatgcctccagtaaaccagcaagaacttcgggaagcctggttgat
acttcctataaaaccctaaggtttgctctgagggcatctctgaaaactgccatctacagg
ataactaccacctttggcgaacatttaaatgctgttcaagtgtcgactgagcatcgaaaa
agactccagcagtttttggaatataaagaatga
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