Polyodon spathula (Mississippi paddlefish): 121326398
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Entry
121326398 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03030
DNA replication
pspa03410
Base excision repair
pspa03420
Nucleotide excision repair
pspa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121326398
03410 Base excision repair
121326398
03420 Nucleotide excision repair
121326398
03430 Mismatch repair
121326398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspa03032
]
121326398
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121326398
DNA replication proteins [BR:
pspa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121326398
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121326398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA
AAA_22
RuvB_N
AAA_33
AAA_5
AAA_30
AAA_17
AAA_19
AAA_18
Rad17
AAA_14
RNA_helicase
nSTAND3
AAA_7
AAA_16
Motif
Other DBs
NCBI-GeneID:
121326398
NCBI-ProteinID:
XP_041125620
LinkDB
All DBs
Position
1:complement(89879147..89902732)
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AA seq
969 aa
AA seq
DB search
MVGVASLTSVCTGCSWNGSVCRKPSPESSDRLWIVTDGAHRPDDVINGTNLVAFFVSSRK
VVCLKQLRCKTNVCLFFFYLDEEDNFESLKQPQKSKANGLSASNRSGSSGRAAEVKPPAK
PAPPKAVTPAKCTPTSVFDYFGGSSVQRSHKKLVATTKRRAPTGCTDDSTDEDEAIAHQL
QMDEDAELERQLHEDEEFARTLAILDEPPQSKKARKDSEDQQPSASLPVNSPVKPDRATV
KQEGVGSKDSPPKKPSPIKASSKLALMKQKKGTLKKEAVKETSVKEKTISPKKEEVVILK
TEKSSPKKSESKSPEDSEKKGVNLQAYRSYSNRDGPRALGSKEVPKNKKSMLKTPEKPAK
TTPPKQAESANRKTPTPPKKGLSFQQNSLEKVEPPAPSENKEESLLWVDKYKPISLKNII
GQQGDQSCANKLLRWLRNWHHNTAGDKKPAAKFSKFAGKEDGSTFKAALLLGPPGVGKTT
TAVLVCEELGFSYVEQNASCTRSKNSLKEVIAESLNNASIKNFYSGTSHTVSSKHVLIMD
EVDGMAGNEDRGGIQELIGLIKNTKIPIICMCNDRNHQKIRSLVNYCFDLRFQRPRVEQI
KGAMMSVAFKEGLKVPPPALNEIILAANQDIRQVLHNLSMWSARDKVLSYDQAKSDASKA
RKDIKMGPFDVCRKVFAAGDETAHMSLIDKSDLFFHDCSLAPLFVQENYIHVRPAAAGSN
VKKHLMLLSRTADSICDGDLVDRQIRSKQMWSLLPTQAIYACVLPGELMRGHMAQFPSFP
SWLGKFSSTGKHDRIIQELSMHMCLRTHVSKRAVNMECLPFLRDSLVRPMAEHGVEGVPE
AVQLMDDYCLMKEDVDNIMEISTWGGRPDSFSKLDPKVKSAFTRTYNKETHLTPYSLQAV
KKAKRGAGSTVDFGDEFGTEDTQPEDKESEDTIETDAMIKQKKAKSFKSTKDQKTTDSGK
GKGKAKKTK
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggtaggagtggcctcactgaccagtgtgtgtactgggtgttcctggaatggcagtgtt
tgcagaaaaccatcaccagaaagcagtgatcgtctgtggatagtgacagatggagcccac
agaccagatgatgtaatcaatgggactaacctggtggccttctttgtatcatctagaaag
gttgtttgtttaaaacaactgaggtgcaagacaaacgtgtgtttgtttttcttctattta
gatgaagaagataactttgaatccttaaaacagcctcagaaaagcaaagcgaatggcctg
tctgcttccaatcgttcaggcagcagtggaagagcagctgaagtgaaaccccccgctaaa
ccagctcctcctaaagcagtgactccagcgaaatgcactcctacgtcagtgtttgattac
tttggaggcagcagtgtgcagaggtcacataaaaagctagtggctacgacaaagagaaga
gctcccacaggatgcactgatgactccactgatgaagatgaggctattgcccaccagctt
cagatggatgaggatgcagagctggagagacagcttcatgaagatgaagagtttgcaagg
accctggcgattctagatgagcccccacaatccaaaaaggcaagaaaggactctgaggat
cagcagccatctgcatctctgcccgttaacagtccagtcaaaccagacagagccactgtc
aaacaagaaggtgtcggttcaaaggactcccctcccaagaaaccctcacccatcaaagcc
agctccaagctggcgcttatgaaacagaaaaaaggcacattgaaaaaggaagcggtaaaa
gaaacgtcagtgaaagagaagaccatttcacccaaaaaagaagaggtggtcatcctcaaa
acagagaaaagttctcccaaaaaatcagagtctaaaagtccagaagactccgaaaaaaaa
ggggtaaacttacaggcttatcgcagctactcgaacagagatggtccaagagcacttgga
tcaaaagaagtacccaaaaataagaagtccatgttgaaaacaccagaaaagcctgcaaag
accacccctccaaagcaagcagagtctgcaaacagaaagactcccacccctccgaagaaa
ggcctgtccttccagcagaattcactcgagaaggtggagcctcctgccccaagtgaaaac
aaagaggagagcctgctctgggtggacaagtacaagcccatctccttgaagaacatcatc
ggacagcagggagaccagagctgtgccaacaagctcctacgctggctccgcaactggcac
cacaacactgccggtgacaagaagcctgcagcaaaattcagtaaatttgctggaaaagaa
gatggctccaccttcaaggcggccttgttgttgggtcctcctggtgtgggtaaaacgacc
actgcagtgctggtctgtgaggagctgggattcagctatgtggagcaaaacgccagctgc
acccgcagtaagaacagcctgaaggaggtgattgctgagtcactaaataacgccagcatc
aagaacttctattcaggcacctctcacacagtgagtagtaaacatgtgctgatcatggat
gaggtggatggaatggcaggcaatgaagacagaggtggaattcaggaactgatcggtctt
attaaaaacacaaagatccctattatctgcatgtgtaatgatcggaatcaccaaaagatc
agatccttggtcaactactgctttgatctgcgtttccagaggccacgagtggagcagatt
aagggtgccatgatgtcggtcgctttcaaagaaggtttgaaggtcccacccccggctcta
aatgaaatcatattggctgctaaccaggacatcagacaggtgcttcacaatctcagtatg
tggtctgcccgggataaagtgctttcttatgaccaggccaaaagcgatgccagtaaggcc
agaaaggatattaagatgggcccctttgacgtgtgccgaaaggtatttgctgctggtgat
gaaactgctcacatgtccctgatagacaaatcagatctcttttttcatgactgctctctg
gcacctctctttgtccaagaaaactatatccatgtgagaccagctgcggcaggcagcaat
gtaaaaaaacacctgatgctcttgagtagaactgctgacagtatttgtgatggagatcta
gtggacagacagattcgctctaaacagatgtggtcattgttacctacacaggcaatttac
gcctgcgtcctccctggagagctaatgagaggacacatggcacagttcccttccttcccc
agctggttaggaaagttttcatcaacgggcaaacatgaccgcatcattcaagaactttca
atgcacatgtgtctgaggacacatgttagtaagagggcggtgaacatggagtgtcttcca
ttcttgagggactctctggtgaggccaatggcagagcacggggtggagggggtccccgag
gctgtgcagctcatggacgactattgtctcatgaaggaggacgtggacaacatcatggag
atcagcacctggggggggcgcccagactccttctccaagctagacccaaaggttaagtct
gccttcacccgtacctacaacaaggagacacacttaaccccctactcgctgcaggctgta
aagaaggcaaaacgtggagcaggctcgaccgtggacttcggagatgaatttggcacagag
gacacccaaccagaggacaaggagtctgaagacaccattgaaacagatgccatgattaag
caaaagaaagcaaaatctttcaagtcaacaaaagatcagaaaaccactgattctggaaaa
gggaaggggaaagcaaagaaaacaaaatga
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